Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b04
         (430 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X65923-1|CAA46716.1|  133|Homo sapiens fau protein.                    97   2e-20
X65921-1|CAA46714.1|  133|Homo sapiens fau 1 protein.                  97   2e-20
CR541974-1|CAG46772.1|  133|Homo sapiens FAU protein.                  97   2e-20
BC033877-1|AAH33877.1|  133|Homo sapiens Finkel-Biskis-Reilly mu...    97   2e-20
AY398663-1|AAQ87877.1|  133|Homo sapiens Finkel-Biskis-Reilly mu...    97   2e-20
AK026639-1|BAB15515.1|  133|Homo sapiens protein ( Homo sapiens ...    97   2e-20
AK027396-1|BAB55082.1|  171|Homo sapiens protein ( Homo sapiens ...    29   8.8  

>X65923-1|CAA46716.1|  133|Homo sapiens fau protein.
          Length = 133

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -2

Query: 390 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXX 211
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAP             
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 210 XXXLTVP---LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNQKICQXL 40
                     +LGGKVHGSLARAGKV+GQTPKV        KTGRAKRR+QYN++    +
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN-V 119

Query: 39  CRPFGRR 19
              FG++
Sbjct: 120 VPTFGKK 126


>X65921-1|CAA46714.1|  133|Homo sapiens fau 1 protein.
          Length = 133

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -2

Query: 390 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXX 211
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAP             
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 210 XXXLTVP---LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNQKICQXL 40
                     +LGGKVHGSLARAGKV+GQTPKV        KTGRAKRR+QYN++    +
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN-V 119

Query: 39  CRPFGRR 19
              FG++
Sbjct: 120 VPTFGKK 126


>CR541974-1|CAG46772.1|  133|Homo sapiens FAU protein.
          Length = 133

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -2

Query: 390 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXX 211
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAP             
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 210 XXXLTVP---LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNQKICQXL 40
                     +LGGKVHGSLARAGKV+GQTPKV        KTGRAKRR+QYN++    +
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN-V 119

Query: 39  CRPFGRR 19
              FG++
Sbjct: 120 VPTFGKK 126


>BC033877-1|AAH33877.1|  133|Homo sapiens Finkel-Biskis-Reilly
           murine sarcoma virus (FBR-MuSV) ubiquitously expressed
           protein.
          Length = 133

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -2

Query: 390 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXX 211
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAP             
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 210 XXXLTVP---LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNQKICQXL 40
                     +LGGKVHGSLARAGKV+GQTPKV        KTGRAKRR+QYN++    +
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN-V 119

Query: 39  CRPFGRR 19
              FG++
Sbjct: 120 VPTFGKK 126


>AY398663-1|AAQ87877.1|  133|Homo sapiens Finkel-Biskis-Reilly
           murine sarcoma virus (FBR-MuSV) ubiquitously expressed
           (fo protein.
          Length = 133

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -2

Query: 390 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXX 211
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAP             
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 210 XXXLTVP---LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNQKICQXL 40
                     +LGGKVHGSLARAGKV+GQTPKV        KTGRAKRR+QYN++    +
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN-V 119

Query: 39  CRPFGRR 19
              FG++
Sbjct: 120 VPTFGKK 126


>AK026639-1|BAB15515.1|  133|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22986 fis, clone KAT11742. ).
          Length = 133

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -2

Query: 390 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXX 211
           MQL +R Q  H  +V GQE++ QIK  + +L  +  ED  + L GAP             
Sbjct: 1   MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE 60

Query: 210 XXXLTVP---LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNQKICQXL 40
                     +LGGKVHGSLARAGKV+GQTPKV        KTGRAKRR+QYN++    +
Sbjct: 61  ALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN-V 119

Query: 39  CRPFGRR 19
              FG++
Sbjct: 120 VPTFGKK 126


>AK027396-1|BAB55082.1|  171|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14490 fis, clone MAMMA1002886. ).
          Length = 171

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 355 PGRQWPGVHWSDQGTHSY 302
           PG  W G HW  QG  +Y
Sbjct: 55  PGSAWSGDHWDSQGQEAY 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,652,141
Number of Sequences: 237096
Number of extensions: 1013423
Number of successful extensions: 7861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7855
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)