Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b01
         (803 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1CWL2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q4P292 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_UPI000065FC8A Cluster: Homolog of Homo sapiens "Ankyrin...    34   3.6  
UniRef50_Q7S0P9 Cluster: Putative uncharacterized protein NCU073...    34   3.6  
UniRef50_UPI00015B5730 Cluster: PREDICTED: similar to guanine-nu...    33   6.4  
UniRef50_Q8QZQ8 Cluster: 261R; n=1; Invertebrate iridescent viru...    33   6.4  
UniRef50_Q4DLM1 Cluster: Putative uncharacterized protein; n=3; ...    33   6.4  
UniRef50_UPI0000EB024D Cluster: UPI0000EB024D related cluster; n...    33   8.4  
UniRef50_Q13428 Cluster: Treacle protein; n=11; Catarrhini|Rep: ...    33   8.4  

>UniRef50_Q1CWL2 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 130

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
 Frame = +2

Query: 41  KLKITQVSTRTATHERHAQK*GRRAPKARFY---SVSGRGLPGLGNTA----VPDGEASS 199
           +LK T V   +A    HA+K GRR    R +   SVS R  PG G TA    +P+ E   
Sbjct: 21  ELKPTDVHLASADSTHHAKKSGRRTLGKRTFADRSVSPRHAPGRGLTAKSRKLPEPEPGQ 80

Query: 200 TASSLNRGRPLPATSEVA 253
             SS +R + LP+ + VA
Sbjct: 81  --SSTSRRKTLPSAAAVA 96


>UniRef50_Q4P292 Cluster: Putative uncharacterized protein; n=1;
            Ustilago maydis|Rep: Putative uncharacterized protein -
            Ustilago maydis (Smut fungus)
          Length = 1853

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 140  SGRGLPGLGNTAVPDGEASSTASSLNRGRPLPAT---SEVASISSPSVTQKNLQSGLND 307
            SGR   G  NT  P   A S+  SL+ G P P++   S  AS +S + +Q +L   LN+
Sbjct: 1068 SGRARRGPANTVPPASAAMSSQRSLSPGAPHPSSIMQSRTASTTSQASSQNSLPRALNE 1126


>UniRef50_UPI000065FC8A Cluster: Homolog of Homo sapiens "Ankyrin 3
            isoform 1; n=1; Takifugu rubripes|Rep: Homolog of Homo
            sapiens "Ankyrin 3 isoform 1 - Takifugu rubripes
          Length = 3480

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = -3

Query: 264  ELIDATSDVAGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPETL*KRAFGALRPYFCAWR 85
            E I AT+  A   +    +EA++  S SG   L S  +PR   +    +G++R       
Sbjct: 1838 ERIQATTQAATSSVSAALNEAIDSHSVSGYGTLKSLSSPRRSVMSSSTYGSVRTAPATTT 1897

Query: 84   SCVAVLVETCVILSFVN 34
              V+    T  + SFVN
Sbjct: 1898 LSVSSSAMTVPVYSFVN 1914


>UniRef50_Q7S0P9 Cluster: Putative uncharacterized protein
           NCU07360.1; n=1; Neurospora crassa|Rep: Putative
           uncharacterized protein NCU07360.1 - Neurospora crassa
          Length = 309

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +2

Query: 62  STRTATHERHAQK*GRRAPKARFYSVSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPAT 241
           +T T T  R  QK  R  P AR Y  S    P    +  P    SST+SS +  +P+P  
Sbjct: 56  TTTTTTTTREIQK-HRLFPSARAYEYSTSSTPSDNTSPKPQPPNSSTSSSSDCNKPIPRY 114

Query: 242 SEVASISSP 268
             +  I+ P
Sbjct: 115 YALFPITLP 123


>UniRef50_UPI00015B5730 Cluster: PREDICTED: similar to
           guanine-nucleotide exchange factor c3g; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to
           guanine-nucleotide exchange factor c3g - Nasonia
           vitripennis
          Length = 1238

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 5/168 (2%)
 Frame = +2

Query: 104 GRRAPKARFYSVSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPSVTQK 283
           G+ A +AR +      L  L     P G A              A S  +   +PSVT  
Sbjct: 37  GKLARRARSFKEDF--LEKLSQMRSPGGTAGGGGGGGGSAAGTRAASPSSPRGAPSVTID 94

Query: 284 NLQSGLNDLAFLRI*NPHYRR-KRALLHRQRGRAKDK--F*SGYRTTVPNCAICDICTTL 454
             Q   ND   LR  + H R+ + ALLH +   +K+K     G  T V +        TL
Sbjct: 95  GQQQQTNDKNPLRDLHVHVRQVQLALLHFRDVVSKNKLEMLPGNGTVVLDTV--TTIHTL 152

Query: 455 IMC*PAYETSNTVARCYRQ-YSPI-QIMNITDTTLLHSRDARSAESAS 592
           +     YE S+T+     Q Y  + Q++ + D  LLH   + + ++A+
Sbjct: 153 LKSYLLYENSSTLGSATNQVYQALAQLLKLCDDVLLHGDQSSALDTAN 200


>UniRef50_Q8QZQ8 Cluster: 261R; n=1; Invertebrate iridescent virus
            6|Rep: 261R - Chilo iridescent virus (CIV) (Insect
            iridescent virus type 6)
          Length = 1361

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 149  GLPGLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPSVTQKNLQSG 298
            G   L N AV   + ++ A  L++  PLPATSE+   SS S T   +  G
Sbjct: 1044 GTAQLANNAVETAQLANGAVGLSQLAPLPATSELIGSSSGSTTASAITLG 1093


>UniRef50_Q4DLM1 Cluster: Putative uncharacterized protein; n=3;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 759

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +2

Query: 68  RTATHERHAQK*GRRAPKARFYSVSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPATSE 247
           +T T ER  +K    A KA   +V+   +P     +VP   +SST+    +  P PA++ 
Sbjct: 411 KTHTAERGEEK--TAAEKAAASNVTPAAVPTAAKVSVPSSPSSSTSVKQRQASPPPASTS 468

Query: 248 VAS---ISSPSVTQKNLQ 292
             S   I+ P + QK  Q
Sbjct: 469 AVSAPVIAPPPLEQKQQQ 486


>UniRef50_UPI0000EB024D Cluster: UPI0000EB024D related cluster; n=1;
           Canis lupus familiaris|Rep: UPI0000EB024D UniRef100
           entry - Canis familiaris
          Length = 545

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 237 AGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPET 136
           + RGLP L   A E  SP   A  P+P +PRP T
Sbjct: 240 SARGLPRLPPPAGEPVSPDPAASRPAPPSPRPAT 273


>UniRef50_Q13428 Cluster: Treacle protein; n=11; Catarrhini|Rep:
           Treacle protein - Homo sapiens (Human)
          Length = 1488

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 119 KARFYSVSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPS 271
           + R  S   +G PG G T  P G+A + AS    G+P   +   +  SS S
Sbjct: 299 QVRAASAPAKGTPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDS 349


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,280,634
Number of Sequences: 1657284
Number of extensions: 18186528
Number of successful extensions: 54313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54271
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)