Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b01
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    26   0.40 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.40 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.71 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   0.93 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.8  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.8  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   5.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   6.6  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   6.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   6.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.7  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    21   8.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 126 AFIVFPVGGCLDSVIRPFLMARRPRPPHLS 215
           +F +FP G     ++ PFL A   RPPH +
Sbjct: 192 SFGIFPGGA--PPLVSPFLAAMAHRPPHFA 219


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 467 PAYETSNTVARCYRQYSPIQIMN-ITDTTLLHSRDARSAESA 589
           P   T+N+   CY  Y     M+ ++ +T+ HS+     E++
Sbjct: 241 PVLSTTNSTTNCYNNYPYYSNMDYLSSSTMSHSQFGNGLETS 282


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +1

Query: 244 RSRINKFTLCNTEKLAVRP**SSIFKNLESALQTQACTLTSAERTSQR*VLKWVSHNCPK 423
           R  +N +  C   K    P    + + L  ALQT     T  +RT+    +K +    PK
Sbjct: 37  RRMVNYYAACLLSKGPCPPQGVDLKRVLPEALQTNCAKCTEKQRTAAYRSIKRLKKEYPK 96

Query: 424 L 426
           +
Sbjct: 97  I 97


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 617 GSKAPKCPPQPQKWEVKQQSAHLNLKMGSKATKCPPRP 730
           GSK  +  P+P +W  ++ ++          T+ PP P
Sbjct: 423 GSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAP 460


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 671 QSAHLNLKMGSKATKCPPRP 730
           Q+++    +GS A  CPP P
Sbjct: 81  QNSYTGYHLGSYAANCPPSP 100



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 655 MGSKATKCPPQP 690
           +GS A  CPP P
Sbjct: 89  LGSYAANCPPSP 100


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 389 YLWLVLSADVRVHA 348
           ++WLVLS+ VR +A
Sbjct: 496 FIWLVLSSTVRAYA 509



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 540 PTQHCYTVGTQDRPNPHLPYCSK 608
           PT+    + T   P   +PYC K
Sbjct: 370 PTKTRTNLPTHRHPQDEIPYCGK 392


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 32  LLTKLKITQVSTRTATHERHAQK 100
           ++TK+ +TQVST  A   R  +K
Sbjct: 122 IITKMTLTQVSTWFANARRRLKK 144


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 588 HLPYCSKNGREVKHRSAHLNLKNGK 662
           H+P C K   +  H  AHL    G+
Sbjct: 318 HIPGCGKVYGKTSHLKAHLRWHTGE 342


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 321 EFRIRTTDASVHSYIGREDEP 383
           E R+R  D+SV   I  ED+P
Sbjct: 54  EARLRANDSSVDPEIDIEDKP 74


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 735 IPVSKKALHVSGVHSPRHNTIYW 803
           + VSK   H+ G+ + + N ++W
Sbjct: 229 LTVSKIKKHIDGMAASKLNVLHW 251


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 466 LTHYKCRTDVTNCAVWDSCAIPTSKLIF 383
           L   KC T V       SC+ P  KL++
Sbjct: 12  LNSLKCITKVLTILGLLSCSFPKKKLVY 39


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 466 LTHYKCRTDVTNCAVWDSCAIPTSKLIF 383
           L   KC T V       SC+ P  KL++
Sbjct: 8   LNSLKCITKVLTILGLLSCSFPKKKLVY 35


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -3

Query: 243 DVAGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPETL*KRAFGALRPYFCAWRSCVAV 70
           D++   + +L D   ED +    + + + G+ +P+T+    FG  + +  A  S V V
Sbjct: 211 DLSSHVITIL-DWTKEDGTDKFMSHIHNDGDNKPDTILVNGFGRFKHFVGADNSTVFV 267


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 646 LRWALRCFTSRPFLEQYGRCGFGRSCVPTV*QCCVGYVH 530
           ++  LR F S PF+ +Y    F      T+ +  V ++H
Sbjct: 51  IKETLRLFPSVPFISRYASEDFVTKTGNTIPEGTVLHIH 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,079
Number of Sequences: 336
Number of extensions: 4609
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)