Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b01
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    29   1.0  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    27   3.1  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.1  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   4.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.1  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    27   4.1  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   5.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   7.2  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.5  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   9.5  

>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 560 CVAVLCRLCSLSVSVNIADNSALLC*MSHMQANTL*VSYRCHKLRSLGQL 411
           C  V+CR C L +S+       L+C MS  Q     V Y+  + +SLG +
Sbjct: 300 CGRVICRFCVLEISLPQHPQPLLIC-MSCNQNYFRNVLYQTERSKSLGYI 348


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 735 IPVSKKALHVSGVHSPRH 788
           +P+ KKAL   GVH P+H
Sbjct: 153 VPIFKKALERVGVHQPKH 170


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 90  WRSCVAVLVETCVILSFVNSRLKP 19
           WR+   VL++   +L+FVN RLKP
Sbjct: 333 WRAMTVVLLDK--LLAFVNERLKP 354


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
 Frame = -2

Query: 721 WALCCFTSH--FKVEVGTLLLYFPFLRLRWA------LRCFTSRPFLEQYGR 590
           W    FT H  F  +   L L+   L  R+       +R F S PF+E+YG+
Sbjct: 121 WLKVIFTEHNLFTKDARPLTLHCTLLNSRYIKYQGRRIRFFNSEPFMEKYGQ 172


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
 Frame = +2

Query: 164 GNTAVPDGEASSTASSL--NRGRPLPATSEV-ASISSPSVTQKNLQS 295
           GNT +P+G +++T +S+  N G    A+ ++ A+  SPS++ K +++
Sbjct: 96  GNTNLPNGTSTNTMASMAANGGASSVASKQMGANQISPSLSSKTMKN 142


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 93  AWRSCVAVLVETCVILSFVNSR 28
           +WR C +V  ET  ILS V +R
Sbjct: 277 SWRECWSVFYETLKILSLVETR 298


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 516  EYCR*QRATVLDVSYAG*HIISVVQMSQIAQ 424
            EYCR +R  + ++SY   H++S+  +  I++
Sbjct: 3725 EYCRKKRTELPELSYCFKHLVSLQSLKSISR 3755


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 540 PTQHCYTVGTQDRPNPHLPYCSKNGREVKHRSAHL 644
           P     T G  D    H P C+K+  EV  R  HL
Sbjct: 271 PKSGAITAGQVDSFVSHFPLCAKHLHEVLKRDKHL 305


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 629 PKCPPQPQKWEVKQQSAHLNLKMGSKA 709
           PK  P PQ+W  K+   ++ +K   K+
Sbjct: 529 PKATPDPQRWIPKRDRTNVKIKSKGKS 555


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 406 IPTSKLIFGSSSLPM*ECTLASV 338
           IPT+ LI GS S+P    TLA V
Sbjct: 16  IPTALLIIGSVSVPSTRMTLAKV 38


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 203 ASSLNRGRPLPATSEVASISSPSVTQKNLQSGLNDLAF 316
           +S+++RG P  A S+V  ISS S   +      +D+ F
Sbjct: 246 SSNVSRGTPSSAHSDVIEISSSSAIARTSGDRKDDVLF 283


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 699 EVKQQSAHLDLNIPVSKKALHVSGVHSPRHNTI 797
           E++  + H DLN P+  K L +    SP   T+
Sbjct: 147 EIRLDTFHYDLNAPIHAKLLTIGSSVSPIRFTL 179


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 781  GEWTPETCSAFFETGMLRSRWA 716
            G WTP+T S F     +R R++
Sbjct: 947  GNWTPDTSSEFMAEYTIRQRYS 968


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 158 GLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPSVTQKNLQSG 298
           GLG   + DGE   +A++ N    + +   +A ++SP+V   +  +G
Sbjct: 442 GLGTGLLKDGEVGISATNRNFKGRMGSREALAYLASPAVVAASAIAG 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,431,458
Number of Sequences: 5004
Number of extensions: 73499
Number of successful extensions: 199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)