Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13b01
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 32 0.46
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 31 1.4
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575... 30 1.9
08_01_0308 - 2617172-2617546 29 3.3
01_05_0130 - 18434678-18435688 29 4.3
03_05_0917 + 28774068-28774128,28774293-28774392,28774413-287750... 29 5.7
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088... 28 7.6
01_01_1219 + 9858375-9858483,9859184-9859506 28 7.6
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422... 28 10.0
05_06_0241 - 26634632-26636263 28 10.0
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 695 MGSKATKCPPRP*HTSFKESAACLRGPLAAPQHHIL 802
+G ++ CPP P H ++ + AA PL A QH ++
Sbjct: 22 LGWRSATCPPTPTHLTYIDGAASRSWPLHARQHTVV 57
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -1
Query: 185 HQERPYYRVQA-TPDRKHYKSEPSVPFALIFVRGVRAW 75
HQ+R +Y++Q+ + D K YK EP+ F FV G+ ++
Sbjct: 223 HQKRQWYQIQSKSRDNKQYK-EPTTLFEHFFVVGLHSY 259
>12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,
5751816-5751993
Length = 1572
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 434 KLRSLGQLCDTHFKTYLWLVLSADVRVHACVCSADSKFLKMLDH 303
KL +G+LC +T L + + C+CS D FL+ H
Sbjct: 1182 KLPRMGKLCSESNETILAQLQEVAISSCPCLCSLDDSFLEQKQH 1225
>08_01_0308 - 2617172-2617546
Length = 124
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 318 KNARSLRPDCKFFCVTEGELIDATSDVAGRGLPLLRDEAVEDAS 187
+ RS P EG+ D+ +D A RGL LLR V+DA+
Sbjct: 24 RRLRSSSPGSSLLRAAEGD--DSATDPARRGLSLLRAAEVDDAA 65
>01_05_0130 - 18434678-18435688
Length = 336
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 113 APKARFYSVSGRGLPGLGNTAVPDGEASS---TASSLNRGRPLPATSEVASISSP 268
+P+ F+ +S R LP + P + S TA+SL R PLPATS + ++ P
Sbjct: 62 SPRLAFHPLSRRLLPAPPAASPPVVSSPSHLVTAASLLRLPPLPATSYLLAVVLP 116
>03_05_0917 +
28774068-28774128,28774293-28774392,28774413-28775056,
28775567-28775727,28776362-28776430
Length = 344
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 138 FPVGGCLDSVIRP-FLMARRPRPPHLSIEEGLFQLRQKS 251
FP G LD ++RP + + RRP + S+ L Q+R+ S
Sbjct: 174 FPTGDTLDCLLRPRYFIPRRPLFQNCSLYRVLCQVRRAS 212
>02_04_0278 -
21507288-21507726,21507893-21507972,21508587-21508840,
21508988-21509180
Length = 321
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 192 ASPSGTAVLPSPGNPRPETL*KRAFGALRPYFCAWRSCV 76
A+ + A +PSPG P + FGA RP+F + + V
Sbjct: 270 AAITAAAAVPSPGAGSPPSSSAALFGARRPHFGPFAAAV 308
>01_01_1219 + 9858375-9858483,9859184-9859506
Length = 143
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 194 SSTASSLNRGRPLPATSEVAS-ISSPSVTQKNLQS 295
+S+++S R R LPA++ VAS I +P + KNL S
Sbjct: 13 ASSSASPPRARALPASANVASTIPAPRLQCKNLSS 47
>09_06_0200 +
21539963-21541271,21541912-21542013,21542095-21542291,
21542396-21542603,21542685-21542922,21543010-21543160,
21543538-21543849
Length = 838
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = -2
Query: 592 RCGFGRSCVPTV*QCCVGYVHYLYR*ILPITARY-----CVRCLICRLTHYKCRTDVTNC 428
RCG G V + QC +VH R + A CV L++ + R D T C
Sbjct: 344 RCGDGFLAVQGM-QCPDKFVHVPNRTLEACAAECSSNCSCVAYAYANLSNSRSRGDTTRC 402
Query: 427 AVWDSCAIPTSKL 389
VW I +K+
Sbjct: 403 LVWSGELIDMAKV 415
>05_06_0241 - 26634632-26636263
Length = 543
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 514 FTDTDNEHNRHNTATQ*GRKIGRIRI 591
F D D+ H+R A + R+IGR+R+
Sbjct: 147 FLDADDSHDRAGRARRRRRRIGRLRV 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,677,034
Number of Sequences: 37544
Number of extensions: 543108
Number of successful extensions: 1568
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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