Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b01
         (803 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    29   0.17 
AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    24   6.3  
AY333999-1|AAR01124.1|  268|Anopheles gambiae FBN23 protein.           23   8.3  
AY324310-1|AAQ89695.1|  160|Anopheles gambiae insulin-like pepti...    23   8.3  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 196 GRLAIRNGRITESRQPPTGNTIKASLRCP-----SPLFLCVAFVR 77
           GR A R+GR        T NT K  L+CP      PL +C  F R
Sbjct: 317 GRQARRDGRNVALPVQQTNNTFKGYLKCPLCNEQHPLHVCERFER 361


>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -3

Query: 276 VTEG--ELIDATSDVAGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPE 139
           VT G   L D    V G+ +P       EDA    T+++P P   R +
Sbjct: 34  VTHGGLALTDVELAVGGKTVPRPTPATGEDAGRVPTSIIPEPNADRDQ 81


>AY333999-1|AAR01124.1|  268|Anopheles gambiae FBN23 protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
 Frame = -1

Query: 509 ADNSALLC*MSHMQANTL*VSYRCHKLRSLGQLCDTHFKTYLW--LVLSADVRVHACVCS 336
           A +  +L  M  M  N + ++   ++LRS+   C T  + + W   +       H C   
Sbjct: 53  AISEGILAVMKRMSNNLVDLTGAINQLRSISNNCTTPPQKHQWNQTITEQKGNYHECYMP 112

Query: 335 A---DSKFLKMLDH*GLTASFSVLQR 267
                S+  ++ D  GLT S +VL R
Sbjct: 113 QVIHVSREDQLKDSSGLTVSRAVLVR 138


>AY324310-1|AAQ89695.1|  160|Anopheles gambiae insulin-like peptide
           4 precursor protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 666 SNKVPTSTLKWEVKQQSAHLDLNIP 740
           SN+ P S L W+  +     ++N+P
Sbjct: 68  SNQFPGSQLDWDFSENGFKRNVNVP 92


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 904,695
Number of Sequences: 2352
Number of extensions: 19905
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)