Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b01
         (803 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p pro...    32   1.1  
AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-P...    32   1.1  
AL121806-6|CAB58081.1|  373|Drosophila melanogaster EG:BACR42I17...    30   4.3  
AE014298-157|AAF45589.1|  270|Drosophila melanogaster CG14627-PA...    30   4.3  
AJ277178-1|CAB85473.1|  138|Drosophila melanogaster mod(mdg4)54....    29   9.8  
AE014297-2984|AAF55885.2|  498|Drosophila melanogaster CG32491-P...    29   9.8  

>AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p
           protein.
          Length = 920

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 137 VSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPSVT 277
           ++  G PG+G++ VP   +SS+ASS  +      T+  ++  SPS T
Sbjct: 25  IASTGTPGMGSSPVPSRASSSSASSAAQSAWDQLTASASNNMSPSPT 71


>AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-PB
           protein.
          Length = 920

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 137 VSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPSVT 277
           ++  G PG+G++ VP   +SS+ASS  +      T+  ++  SPS T
Sbjct: 25  IASTGTPGMGSSPVPSRASSSSASSAAQSAWDQLTASASNNMSPSPT 71


>AL121806-6|CAB58081.1|  373|Drosophila melanogaster EG:BACR42I17.5
           protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 617 GSKAPKCPPQPQKWEVKQQSAHLN 688
           GSK+P   PQ Q+ + +QQ AHLN
Sbjct: 141 GSKSPNGLPQVQQQQQQQQEAHLN 164


>AE014298-157|AAF45589.1|  270|Drosophila melanogaster CG14627-PA
           protein.
          Length = 270

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 617 GSKAPKCPPQPQKWEVKQQSAHLN 688
           GSK+P   PQ Q+ + +QQ AHLN
Sbjct: 38  GSKSPNGLPQVQQQQQQQQEAHLN 61


>AJ277178-1|CAB85473.1|  138|Drosophila melanogaster mod(mdg4)54.6
           protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 612 GREVKHRSAHLNLKNGK*SNKVPTSTLKWEVKQQSAHLDLNIPVSKKALHVSGVHS 779
           G  V H   H  L+N    +KV     KW  + +S  +   +P  +    VSGVH+
Sbjct: 81  GNVVLHCGEHRYLRNAAYKDKVYWKCSKWRKQCRSRVITHILPNGQSRYAVSGVHN 136


>AE014297-2984|AAF55885.2|  498|Drosophila melanogaster CG32491-PB,
           isoform B protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 612 GREVKHRSAHLNLKNGK*SNKVPTSTLKWEVKQQSAHLDLNIPVSKKALHVSGVHS 779
           G  V H   H  L+N    +KV     KW  + +S  +   +P  +    VSGVH+
Sbjct: 441 GNVVLHCGEHRYLRNAAYKDKVYWKCSKWRKQCRSRVITHILPNGQSRYAVSGVHN 496


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,885,531
Number of Sequences: 53049
Number of extensions: 901381
Number of successful extensions: 3265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3263
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)