Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13b01
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 30 2.2
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 29 5.1
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 29 5.1
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 29 5.1
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 29 5.1
AF016433-1|AAB65388.1| 346|Caenorhabditis elegans Seven tm rece... 29 5.1
AC025724-4|AAP31423.1| 612|Caenorhabditis elegans Hypothetical ... 29 5.1
AC025724-3|AAG23379.2| 662|Caenorhabditis elegans Hypothetical ... 29 5.1
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 28 6.8
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 28 6.8
AF016673-1|AAB66121.1| 441|Caenorhabditis elegans Hypothetical ... 28 9.0
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 191 ASSTASSLNRGRPLPAT--SEVASISSPSVTQKN 286
A+STASS+ RGRP+ +T ++ + PS KN
Sbjct: 135 ANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKN 168
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 191 ASSTASSLNRGRPLPAT--SEVASISSPSVTQKN 286
A+STASS+ RGRP+ +T ++ + PS KN
Sbjct: 135 ANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKN 168
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 191 ASSTASSLNRGRPLPATSEVASISSPSVTQKNL 289
+SS+ SS RG+PLPA E + S + NL
Sbjct: 107 SSSSQSSRTRGQPLPAMPEEEEVFDKSSSSDNL 139
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 191 ASSTASSLNRGRPLPATSEVASISSPSVTQKNL 289
+SS+ SS RG+PLPA E + S + NL
Sbjct: 110 SSSSQSSRTRGQPLPAMPEEEEVFDKSSSSDNL 142
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 191 ASSTASSLNRGRPLPATSEVASISSPSVTQKNL 289
+SS+ SS RG+PLPA E + S + NL
Sbjct: 110 SSSSQSSRTRGQPLPAMPEEEEVFDKSSSSDNL 142
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 191 ASSTASSLNRGRPLPATSEVASISSPSVTQKNL 289
+SS+ SS RG+PLPA E + S + NL
Sbjct: 110 SSSSQSSRTRGQPLPAMPEEEEVFDKSSSSDNL 142
>AF016433-1|AAB65388.1| 346|Caenorhabditis elegans Seven tm
receptor protein 140 protein.
Length = 346
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 671 VALLPIFEVEVGTSVLYFPSIFRAVW*MRIRPILRPYCVAVL--CRLCSLSVSVNI 510
+ +PIFE+EVG + P +F +++ I PI CV C LC N+
Sbjct: 267 ILTVPIFEIEVG-KLANIPGMFASIY-PAIEPIFAILCVKEFRNCVLCKKHFVSNV 320
>AC025724-4|AAP31423.1| 612|Caenorhabditis elegans Hypothetical
protein Y67D8C.3b protein.
Length = 612
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 252 ATSDVAGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPETL*KRAFGALRP 103
AT + G GLPL E D T + PS P P + +A+G RP
Sbjct: 84 ATRFLLGNGLPLTSIED-HDLRTFLTTLNPSRSLPEPSNMTTKAYGEYRP 132
>AC025724-3|AAG23379.2| 662|Caenorhabditis elegans Hypothetical
protein Y67D8C.3a protein.
Length = 662
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 252 ATSDVAGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPETL*KRAFGALRP 103
AT + G GLPL E D T + PS P P + +A+G RP
Sbjct: 134 ATRFLLGNGLPLTSIED-HDLRTFLTTLNPSRSLPEPSNMTTKAYGEYRP 182
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 137 VSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPSVTQKNL 289
V+ + P N V +SSTAS+ PAT V IS P+ Q+ L
Sbjct: 1270 VAPKQTPSATNQNVDTQHSSSTASTATLVSETPATVHVTPISVPAPVQEPL 1320
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 137 VSGRGLPGLGNTAVPDGEASSTASSLNRGRPLPATSEVASISSPSVTQKNL 289
V+ + P N V +SSTAS+ PAT V IS P+ Q+ L
Sbjct: 1270 VAPKQTPSATNQNVDTQHSSSTASTATLVSETPATVHVTPISVPAPVQEPL 1320
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 578 PILRPYCVAVLCRLCSLSVS 519
P PYC+A+LC L S S S
Sbjct: 190 PEWMPYCIAILCNLASASKS 209
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 221 GRPLPATSEVASISSPSVTQKNLQSGLNDLAFLRI*NPHYRRKRALL 361
G P+TS +AS S+ SVT+ L+S +N + P RRK +L
Sbjct: 244 GGSAPSTSSIASYSAESVTETALES-VNTKSVESKTRPSSRRKSLIL 289
>AF016673-1|AAB66121.1| 441|Caenorhabditis elegans Hypothetical
protein T06D4.1a protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 213 RDEAV-EDASPSGTAVLPSPGNPRPETL*KRAFGALRPY 100
R+EA E+ +P A LP P +P L + G+LRPY
Sbjct: 43 REEAKGEEEAPQVAAALPIPDSPFLTELARLLRGSLRPY 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,667,050
Number of Sequences: 27780
Number of extensions: 449050
Number of successful extensions: 1379
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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