Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a19
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 205 2e-54
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 205 2e-54
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 38 0.001
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 2.5
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 26 3.4
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 4.5
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.9
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.8
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 7.8
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 205 bits (501), Expect = 2e-54
Identities = 94/149 (63%), Positives = 119/149 (79%)
Frame = -3
Query: 464 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 285
+++++ Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53
Query: 284 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 105
KCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54 KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Query: 104 DVEIGDIVTIGECRPLSKTVRFNVLKVSK 18
+ GD+VT+G+CRPLSKTVRFNVL+V K
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFNVLRVVK 141
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 205 bits (501), Expect = 2e-54
Identities = 94/149 (63%), Positives = 119/149 (79%)
Frame = -3
Query: 464 LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 285
+++++ Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EAI G Y+DK
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDK 53
Query: 284 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 105
KCPF G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR
Sbjct: 54 KCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Query: 104 DVEIGDIVTIGECRPLSKTVRFNVLKVSK 18
+ GD+VT+G+CRPLSKTVRFNVL+V K
Sbjct: 114 -INEGDVVTVGQCRPLSKTVRFNVLRVVK 141
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -3
Query: 236 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 57
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 56 SKTVRFNVLKV 24
S T RF ++K+
Sbjct: 64 SATKRFEIIKI 74
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 325 LKPRPTSLWYLNGFLLRFTP 384
L P+PT+ W NGF + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 177 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 284
V + HDS+LH +FLN +D + T+E L
Sbjct: 24 VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 101 VEIGDIVTIGECRPLSKTVRFNVLKVS 21
V +GDIVTI C + R +VL ++
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVLPLA 140
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 195 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 302
+H +H+ H L D + + DRN +EGT N T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 383 GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 285
G+K + +P Y VGLG K + I T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 379 TPIPFLRFRKTVGCFWNER 435
T F++ R TV CFW E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,881
Number of Sequences: 5004
Number of extensions: 38662
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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