Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a19
         (475 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...   203   3e-54
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.33 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   1.8  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    24   3.1  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   5.4  
AF203337-1|AAF19832.1|  184|Anopheles gambiae immune-responsive ...    23   7.2  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    22   9.5  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    22   9.5  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score =  203 bits (495), Expect = 3e-54
 Identities = 104/151 (68%), Positives = 120/151 (79%), Gaps = 1/151 (0%)
 Frame = -3

Query: 452 MADQTE-RSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 276
           MADQ   R+FQKQ  + LNRK    V R +K LR H  +GLGFKTP+EAI GTYIDKKCP
Sbjct: 1   MADQQNIRAFQKQLGINLNRKN---VSR-KKGLRMHHSIGLGFKTPKEAITGTYIDKKCP 56

Query: 275 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 96
           FTG++SIRGRILTGVV+K  +   + IRRDYL ++ KY+ FEKR+RNM +HLSPCFRDVE
Sbjct: 57  FTGHISIRGRILTGVVRKCIV--LLYIRRDYLQFIRKYDTFEKRNRNMRLHLSPCFRDVE 114

Query: 95  IGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
            GDIVT+GECRPLSKTVRFNVLK SK  GSK
Sbjct: 115 AGDIVTLGECRPLSKTVRFNVLKESKMAGSK 145


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 458 SKMADQTERSFQKQPTVFLNRKKGIGVK 375
           +KMAD T+R++ + P +F++   G  +K
Sbjct: 614 TKMADGTQRAYVRLPAMFVSELDGTKIK 641


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 237  GEDAAADRNVTSEGTLLVNVGT-LNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKDC 413
            GED   D+   S+GTLL  +GT  N +   + T+  +    +R ++   + +FL    DC
Sbjct: 1268 GEDDTGDKKTDSDGTLL-EIGTWSNEMAVGVGTDNDMGEEGRRGAS---SPSFLRYDSDC 1323


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 270 SEGTLL-VNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAV 401
           ++G +L +++GTL++L GSL  E  +        +P H    L++
Sbjct: 303 AQGDVLELDIGTLDQLAGSLADELTLQQNDYFKGSPAHRKPLLSM 347


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1248

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 315  TGSLETEAHILVVSQRFS 368
            TGS+E+ AH+L    RF+
Sbjct: 951  TGSVESVAHVLFYCPRFA 968


>AF203337-1|AAF19832.1|  184|Anopheles gambiae immune-responsive
           serine protease-relatedprotein ISPR9 protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -2

Query: 456 QNGGSDGTLIPKTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQD 322
           Q GG  GT   K       P +        KTV +PQ CG R  D
Sbjct: 21  QGGGVKGTQPDKVGTGTQNPLD--------KTVSVPQKCGLRNVD 57


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 243 DAAADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKD 410
           + +A  +VTSEGT+  ++ T +      ET +     ++ +    H ++ L   K+
Sbjct: 546 NTSASSSVTSEGTITPDLQTFDYHDEGGETSSVYSCDTEGYYTSFHVDSGLKTLKE 601


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 243 DAAADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKD 410
           + +A  +VTSEGT+  ++ T +      ET +     ++ +    H ++ L   K+
Sbjct: 547 NTSASSSVTSEGTITPDLQTFDYHDEGGETSSVYSCDTEGYYTSFHVDSGLKTLKE 602


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,861
Number of Sequences: 2352
Number of extensions: 10264
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)