Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a19
(475 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-1421|AAM71028.1| 155|Drosophila melanogaster CG8857-PC... 242 2e-64
AE013599-1420|AAF58552.1| 155|Drosophila melanogaster CG8857-PA... 242 2e-64
AE013599-1422|AAM71029.1| 154|Drosophila melanogaster CG8857-PB... 228 3e-60
BT004880-1|AAO45236.1| 348|Drosophila melanogaster GH14121p pro... 32 0.46
AE014297-786|AAF54268.1| 348|Drosophila melanogaster CG8043-PA ... 32 0.46
AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p pro... 31 0.60
AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-P... 31 0.60
AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-P... 31 0.60
BT025187-1|ABF02289.1| 472|Drosophila melanogaster IP15591p pro... 27 9.8
BT023826-1|AAZ86747.1| 534|Drosophila melanogaster RE59757p pro... 27 9.8
AE014297-2610|AAF55617.2| 534|Drosophila melanogaster CG31043-P... 27 9.8
AE014297-2609|AAZ52530.1| 1044|Drosophila melanogaster CG31043-P... 27 9.8
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P... 27 9.8
>AE013599-1421|AAM71028.1| 155|Drosophila melanogaster CG8857-PC,
isoform C protein.
Length = 155
Score = 242 bits (592), Expect = 2e-64
Identities = 118/150 (78%), Positives = 132/150 (88%)
Frame = -3
Query: 452 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 273
MADQ ER+FQKQ V LNRK G+ + +K LR +DVGLGFKTPREAI+GTYIDKKCP+
Sbjct: 1 MADQNERAFQKQFGVNLNRKVKPGITK-KKLLRRSRDVGLGFKTPREAIDGTYIDKKCPW 59
Query: 272 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 93
TG+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE
Sbjct: 60 TGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEH 119
Query: 92 GDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
GDIVTIGECRPLSKTVRFNVLKVSKG+G+K
Sbjct: 120 GDIVTIGECRPLSKTVRFNVLKVSKGQGAK 149
>AE013599-1420|AAF58552.1| 155|Drosophila melanogaster CG8857-PA,
isoform A protein.
Length = 155
Score = 242 bits (592), Expect = 2e-64
Identities = 118/150 (78%), Positives = 132/150 (88%)
Frame = -3
Query: 452 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 273
MADQ ER+FQKQ V LNRK G+ + +K LR +DVGLGFKTPREAI+GTYIDKKCP+
Sbjct: 1 MADQNERAFQKQFGVNLNRKVKPGITK-KKLLRRSRDVGLGFKTPREAIDGTYIDKKCPW 59
Query: 272 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 93
TG+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE
Sbjct: 60 TGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEH 119
Query: 92 GDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
GDIVTIGECRPLSKTVRFNVLKVSKG+G+K
Sbjct: 120 GDIVTIGECRPLSKTVRFNVLKVSKGQGAK 149
>AE013599-1422|AAM71029.1| 154|Drosophila melanogaster CG8857-PB,
isoform B protein.
Length = 154
Score = 228 bits (558), Expect = 3e-60
Identities = 111/151 (73%), Positives = 131/151 (86%), Gaps = 1/151 (0%)
Frame = -3
Query: 452 MADQ-TERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCP 276
MADQ TERSF+KQ V + R+K +K+ +P R+++ +GLGF+ P EAI+GTYIDKKCP
Sbjct: 1 MADQQTERSFRKQHAVVVVRRKSPNLKK--RP-RFYRQIGLGFRAPAEAIDGTYIDKKCP 57
Query: 275 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 96
+TG+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE
Sbjct: 58 WTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVE 117
Query: 95 IGDIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
GDIVTIGECRPLSKTVRFNVLKVSKG+G+K
Sbjct: 118 HGDIVTIGECRPLSKTVRFNVLKVSKGQGAK 148
>BT004880-1|AAO45236.1| 348|Drosophila melanogaster GH14121p
protein.
Length = 348
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 120 QMHGHIPVPFLEPIVFG*VVKVIAADHDSSLHLHFLNDAG 239
++HG VPFL+ + V ++ + +S++ HFLN AG
Sbjct: 50 RVHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAG 89
>AE014297-786|AAF54268.1| 348|Drosophila melanogaster CG8043-PA
protein.
Length = 348
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 120 QMHGHIPVPFLEPIVFG*VVKVIAADHDSSLHLHFLNDAG 239
++HG VPFL+ + V ++ + +S++ HFLN AG
Sbjct: 50 RVHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAG 89
>AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p
protein.
Length = 1188
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 260 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 120
S++ RI+ + M+ R++ I+ Y HYLPK+ R + HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298
>AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-PB,
isoform B protein.
Length = 1188
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 260 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 120
S++ RI+ + M+ R++ I+ Y HYLPK+ R + HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298
>AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-PA,
isoform A protein.
Length = 1188
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 260 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 120
S++ RI+ + M+ R++ I+ Y HYLPK+ R + HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298
>BT025187-1|ABF02289.1| 472|Drosophila melanogaster IP15591p
protein.
Length = 472
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 258 RNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKDCRL 419
R+++ G +L + + +L GS +TE H+L VS +A T + + + RL
Sbjct: 273 RSISFNGEVLSSDHEVLQLNGSTDTEDHLLCVSDFGNANRKLRTRIDAEIEIRL 326
>BT023826-1|AAZ86747.1| 534|Drosophila melanogaster RE59757p
protein.
Length = 534
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 258 RNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKDCRL 419
R+++ G +L + + +L GS +TE H+L VS +A T + + + RL
Sbjct: 273 RSISFNGEVLSSDHEVLQLNGSTDTEDHLLCVSDFGNANRKLRTRIDAEIEIRL 326
>AE014297-2610|AAF55617.2| 534|Drosophila melanogaster CG31043-PB,
isoform B protein.
Length = 534
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 258 RNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKDCRL 419
R+++ G +L + + +L GS +TE H+L VS +A T + + + RL
Sbjct: 273 RSISFNGEVLSSDHEVLQLNGSTDTEDHLLCVSDFGNANRKLRTRIDAEIEIRL 326
>AE014297-2609|AAZ52530.1| 1044|Drosophila melanogaster CG31043-PC,
isoform C protein.
Length = 1044
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 258 RNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKDCRL 419
R+++ G +L + + +L GS +TE H+L VS +A T + + + RL
Sbjct: 273 RSISFNGEVLSSDHEVLQLNGSTDTEDHLLCVSDFGNANRKLRTRIDAEIEIRL 326
>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
isoform A protein.
Length = 1788
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 258 RNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHTNTFLAVQKDCRL 419
R+++ G +L + + +L GS +TE H+L VS +A T + + + RL
Sbjct: 273 RSISFNGEVLSSDHEVLQLNGSTDTEDHLLCVSDFGNANRKLRTRIDAEIEIRL 326
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,767,385
Number of Sequences: 53049
Number of extensions: 459166
Number of successful extensions: 1227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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