Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a17
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 106 3e-24
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 58 1e-09
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 58 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 2e-05
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 44 3e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 31 0.19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 29 1.0
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 4.0
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 4.0
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 27 4.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.4
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 5.4
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 7.1
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 26 7.1
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 106 bits (255), Expect = 3e-24
Identities = 53/131 (40%), Positives = 75/131 (57%)
Frame = -3
Query: 492 QLHLAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQF 313
QLHL +E RVPE++F PS++G +AG+ E M + + + EEQ L +NV ITGG
Sbjct: 588 QLHLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSL 647
Query: 312 PGXXXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
PG + P S+ V A NP LDAW GA +++ + F+ +T+ +YLE G
Sbjct: 648 PGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKG 707
Query: 132 GEYLKEHYASN 100
EY+KEH N
Sbjct: 708 PEYIKEHSLGN 718
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 58.4 bits (135), Expect = 1e-09
Identities = 39/132 (29%), Positives = 57/132 (43%)
Frame = -3
Query: 516 IPAKHRERQLHLAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVF 337
I K ++ L+L+ E F +PEL+F PS + EAG+ E + HF Q +L NV
Sbjct: 265 INQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVV 324
Query: 336 ITGGSSQFPGXXXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCIT 157
GG+ +FPG + P KV +P W A + N IT
Sbjct: 325 TIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHMPLEHWNAN-KIT 383
Query: 156 KGDYLEMGGEYL 121
+ +Y E G +
Sbjct: 384 RSEYSEHGANIM 395
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/114 (29%), Positives = 49/114 (42%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXXX 295
E FR PE +FQPS LG AG+ E + + L NV ++GG++ +PG
Sbjct: 253 ERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADR 312
Query: 294 XXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K+V W G AS + F+ I+K +Y E G
Sbjct: 313 MQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.0 bits (99), Expect = 2e-05
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLL---------LANNVFITGGS 322
E FR+ E++F PS + A T + H + +L L NN+ +TGG+
Sbjct: 294 ERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGT 353
Query: 321 SQFPGXXXXXXXXXXEMRPFK--STHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGD 148
S PG + + H A S W+G AS + F++ ++K +
Sbjct: 354 SLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQE 413
Query: 147 YLEMG 133
Y E+G
Sbjct: 414 YDEVG 418
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/113 (24%), Positives = 48/113 (42%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
L E F PE++F P M+G+ +GL + + + L +N+ ++GGS+ G
Sbjct: 255 LGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGF 314
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDY 145
+ K+ K+ + +AW G AS + F IT +Y
Sbjct: 315 GERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY 367
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 31.1 bits (67), Expect = 0.19
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Frame = -3
Query: 489 LHLAIEPFRVPELMFQPSMLGN-LEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQF 313
+ + E F PE+ F P + + L E ++ + + + + L N+ ++GGS+ F
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 312 P--GXXXXXXXXXXEMRPFKSTHKVVMAKNPSLDA------------WYGARDFASSNAF 175
G + + AK+ +D W+G A + F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 174 ENFCITKGDYLEMGGEYLKEH 112
++C TK DY E G + +
Sbjct: 400 GSYCHTKADYEEYGASIARRY 420
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Frame = -3
Query: 354 LANNVFITGGSSQFPGXXXXXXXXXXEMRPFK--STHKVVMAKNPSLDAWYGARDFASSN 181
L NNV + GG+S G ++ P H S +W G +S
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKIHASGHVVERSYASWLGGSILSSLG 405
Query: 180 AFENFCITKGDYLEMGGEYL 121
F I++ +Y E G + L
Sbjct: 406 TFHQLWISRQEYEEHGSDRL 425
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -3
Query: 105 SNPYFKSPAPIVDTTLV----PAGDSNVIKE 25
SNP FKSPAP T+++ G S VI E
Sbjct: 359 SNPLFKSPAPYSPTSVISNHSSTGKSLVISE 389
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Frame = -3
Query: 381 HFTPEEQLLLANNVFITGGSSQFPGXXXXXXXXXXEMRPFKSTHKVV---MAKNPSLDAW 211
+ + E+ L +++ I GG+ QFPG R T V+ + + AW
Sbjct: 520 NLSDEKAKNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAW 579
Query: 210 YGARDFASSNAFENFCITKGDYLEMGGEYLKEHYASNPYF 91
GA + I D+ +G L+ Y + YF
Sbjct: 580 KGACIYNRIRIVSELWIKNSDWKMLGSRVLQ--YKTLGYF 617
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 201 RDFASSNAFENFCITKGDYLEMGGEYLKEHYASNPYFKSPAP 76
RD A ENF DY + + L ++Y S FK P
Sbjct: 85 RDMAKDKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDP 126
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 338 NTLLANSNCSSGVKCLKRYSIVSVSPASKLPNIDGWNISSGTL 466
N LLA+ + ++RY ++ +SP S L GW + S TL
Sbjct: 2009 NLLLADPETFKRLLSIQRYPVIPLSPDSGLL---GWVLDSDTL 2048
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 305 RPGNCELPPVINTLLANSNC 364
+PG+ +L P NT+LA S C
Sbjct: 470 KPGSLKLSPTTNTVLAKSIC 489
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 183 CYSRNLWLRTKRRDLDFSPSPLCE 254
CY++ LW R + L + PL E
Sbjct: 950 CYNQRLWRRNRNEKLIYRTRPLAE 973
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 108 ASNPYFKSPAPIVDTTLVPAGDSNVIKEEV 19
ASN YF+ PA + TLVP + K E+
Sbjct: 166 ASNGYFRRPAAMRAQTLVPITQPDSKKNEL 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,247
Number of Sequences: 5004
Number of extensions: 49210
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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