Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a17
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 88 6e-18
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 73 3e-13
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 65 7e-11
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 65 7e-11
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 64 9e-11
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 64 1e-10
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 63 2e-10
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 63 3e-10
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 62 4e-10
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 60 2e-09
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 54 1e-07
12_02_1282 + 27528159-27529148,27529549-27529614 45 8e-05
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 38 0.007
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 5.6
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215 28 9.7
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 28 9.7
>01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 88.2 bits (209), Expect = 6e-18
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Frame = -3
Query: 645 DDFGNHDSDWDAYKSISREADSDSEADGXXXXXXXXXXXEYE----------------PI 514
D FG D DW YK +S++ D D + + + + P
Sbjct: 502 DTFGTRDEDWLVYKKMSKDNDDDDDGNDDDESELARIASKIQDMDPTFVNKAEAVQQTPE 561
Query: 513 PAKHR-----ERQLHLAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLL-- 355
P K R + ++ + IE FR PE++FQP M+G +AG+ E + + +E +
Sbjct: 562 PPKVRTLTAEDYRISIGIERFRCPEILFQPGMIGIDQAGIDEMVSISLRRLMEDEAVKER 621
Query: 354 LANNVFITGGSSQFPGXXXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAF 175
L ++ +TGG S PG + RP+ S K+V A +P +DAW GA FA+S+ F
Sbjct: 622 LCQSILVTGGCSLIPGMIPRLESGIRQFRPYLSPLKLVRAADPLIDAWRGAAAFAASSKF 681
Query: 174 ENFCITKGDYLEMG 133
+ DY E G
Sbjct: 682 GRHTFSLADYREHG 695
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 72.9 bits (171), Expect = 3e-13
Identities = 41/122 (33%), Positives = 59/122 (48%)
Frame = -3
Query: 498 ERQLHLAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSS 319
+ + L E F VPE++F P LG +AGL E + + P Q +L + +TGGS+
Sbjct: 298 QNEFVLTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERIILTGGST 357
Query: 318 QFPGXXXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLE 139
FP + P K++ ++P L AW G A FE+ CITK +Y E
Sbjct: 358 LFPRFTERLEKELRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEE 417
Query: 138 MG 133
MG
Sbjct: 418 MG 419
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 64.9 bits (151), Expect = 7e-11
Identities = 37/117 (31%), Positives = 53/117 (45%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE++FQPS++G AG+ ET + + L NV ++GGS+ FPG
Sbjct: 255 IGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGI 314
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KVV W G AS + F+ I+K +Y E G
Sbjct: 315 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESG 371
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 64.9 bits (151), Expect = 7e-11
Identities = 37/114 (32%), Positives = 52/114 (45%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXXX 295
E FR PE++FQPSM+G AG+ ET + + L NV ++GG++ FPG
Sbjct: 255 ERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADR 314
Query: 294 XXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KVV W G AS + F+ I+K +Y E G
Sbjct: 315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKDEYDESG 368
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 64.5 bits (150), Expect = 9e-11
Identities = 36/117 (30%), Positives = 53/117 (45%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE++FQPSM+G AG+ ET + + L N+ ++GG++ FPG
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 311
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KVV W G AS + F+ I+K +Y E G
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKDEYDESG 368
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/117 (29%), Positives = 53/117 (45%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE++FQPS++G G+ ET + + L N+ ++GG++ FPG
Sbjct: 249 IGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 308
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KVV W G AS + F+ I+KG+Y E G
Sbjct: 309 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 365
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 63.3 bits (147), Expect = 2e-10
Identities = 35/117 (29%), Positives = 52/117 (44%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE+MFQPS++G G+ ET + + L N+ ++GGS+ FPG
Sbjct: 252 IGAERFRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KVV W G AS + F+ I++ +Y E G
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESG 368
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 62.9 bits (146), Expect = 3e-10
Identities = 35/114 (30%), Positives = 51/114 (44%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXXX 295
E FR PE++FQPS++G G+ E + + L NV ++GGS+ FPG
Sbjct: 254 ERFRCPEVLFQPSLVGMESPGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIADR 313
Query: 294 XXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KV+ W G AS + F+ I+KG+Y E G
Sbjct: 314 MSKEITSLAPSSMKVKVIAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 367
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 62.5 bits (145), Expect = 4e-10
Identities = 35/117 (29%), Positives = 51/117 (43%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE++FQPS +G AG+ ET + + L N+ ++GG++ FPG
Sbjct: 252 IGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 311
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KVV W G AS + F+ I K +Y E G
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 368
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/117 (29%), Positives = 50/117 (42%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE++FQPS +G G+ E + + L NV ++GGS+ FPG
Sbjct: 251 IGAERFRCPEVLFQPSFIGMEAPGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGI 310
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P KVV W G AS + F+ I+K +Y E G
Sbjct: 311 GDRMSKEITALAPGSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESG 367
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/109 (28%), Positives = 46/109 (42%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE++FQPS +G G+ ET + + L N+ ++GGS+ FPG
Sbjct: 252 IGAERFRCPEVLFQPSFIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCIT 157
+ P KVV W G AS + F+ +T
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVNLT 360
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 44.8 bits (101), Expect = 8e-05
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = -3
Query: 483 LAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGX 304
+ E FR PE++FQPS +G AG+ ET + + L N+ ++GG++ FPG
Sbjct: 252 IGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 311
Query: 303 XXXXXXXXXEMRPFKSTHKVVMAK 232
+ P K+ +AK
Sbjct: 312 ADRMSKEITALAPSSMKIKMWIAK 335
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 38.3 bits (85), Expect = 0.007
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPG---- 307
E + V E +FQP +LG + G+ + + TPE L N + GG++ G
Sbjct: 271 ERYIVGEALFQPHILGLEDYGIVHQLVTSVSNVTPEYHRQLLENTMLCGGTASMTGFEDR 330
Query: 306 XXXXXXXXXXEMRPFKSTHKVVMAKN-PSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P M +N AW G A +N +TKGDY E G
Sbjct: 331 FQREANLSASAICPSLVKPPEYMPENLARYSAWLGGAILAKVVFPQNQHVTKGDYDETG 389
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 156 KGDYLEMGGEYLKEHYASNPYFKSPAPI 73
+G Y GG Y ++ Y N Y +SP P+
Sbjct: 207 RGRYRSRGGGYGRDEYYGNSYRRSPPPM 234
>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
Length = 1073
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 323 LPPVINTLLANSNCSSGVKCLKRYSIVSVSPASKLPNIDGW-NISSGTLKGSIARCSCL 496
+PP I L N + G+ + ++S + L ID W N G + ++A CS L
Sbjct: 127 IPPEIGRLTQLRNLNLGMNSITGMIPDTISSCTHLEVIDMWSNNIEGEIPSNLANCSLL 185
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 246 VVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMGGEYLKEHY 109
++ ++PSLD W A +A SNA G +E Y +EHY
Sbjct: 270 LICKQSPSLDDWKSANQYA-SNAKVAVRFVDGTTVEGHFLYCQEHY 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,671
Number of Sequences: 37544
Number of extensions: 326370
Number of successful extensions: 968
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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