Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a17
         (788 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          56   1e-09
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          56   1e-09
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          56   1e-09
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           56   2e-09
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    24   6.2  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   6.2  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
 Frame = -3

Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
           E FR PE +FQPS LG    G+ ET    + K      + L AN V ++GG++ +PG   
Sbjct: 254 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV-LSGGTTMYPGIAD 312

Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
                   + P     K++         W G    AS + F+   I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
 Frame = -3

Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
           E FR PE +FQPS LG    G+ ET    + K      + L AN V ++GG++ +PG   
Sbjct: 254 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV-LSGGTTMYPGIAD 312

Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
                   + P     K++         W G    AS + F+   I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
 Frame = -3

Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
           E FR PE +FQPS LG    G+ ET    + K      + L AN V ++GG++ +PG   
Sbjct: 254 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV-LSGGTTMYPGIAD 312

Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
                   + P     K++         W G    AS + F+   I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 55.6 bits (128), Expect = 2e-09
 Identities = 32/114 (28%), Positives = 49/114 (42%)
 Frame = -3

Query: 474 EPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXXX 295
           E FR PE +FQPS LG    G+ ET+         + +  L  N  ++GG++ +PG    
Sbjct: 254 ERFRAPEALFQPSFLGMESTGIHETVYNSIMRCDVDIRKDLYANSVLSGGTTMYPGIADR 313

Query: 294 XXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
                  + P     K++         W G    AS + F+   I+K +Y E G
Sbjct: 314 MQKEITSLAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQTMWISKHEYDEGG 367


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 550 GVGRSTPRIRAYTGQASRETTTPSYRT 470
           G G  +  +RAY   A R T+TP   T
Sbjct: 407 GCGTQSELLRAYGNLALRRTSTPMLST 433


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 416  ASKLPNIDGWNISSGTLKGSIARCS 490
            + +L  + G  + SGTL G++ RCS
Sbjct: 1062 SEELHLVRGVRLGSGTLVGALNRCS 1086


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,882
Number of Sequences: 2352
Number of extensions: 11989
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)