Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a17
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 59 3e-09
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 59 4e-09
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 59 4e-09
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 58 9e-09
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 58 9e-09
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 58 9e-09
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 58 9e-09
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 58 9e-09
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 58 9e-09
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 56 3e-08
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 48 8e-06
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 46 2e-05
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 40 0.002
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 35 0.076
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 30 2.2
AF408759-1|AAO27838.1| 279|Caenorhabditis elegans LIN-36 protein. 30 2.2
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 30 2.2
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 29 3.8
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE++FQP+ +G AG+ ET + + K + L AN V ++GG+S FPG
Sbjct: 253 ERFRCPEVLFQPAFIGMEGAGIHETTYQSIMKCDVDIRKDLYANTV-LSGGTSMFPGIAD 311
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 312 RMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE MFQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE MFQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE MFQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 57.6 bits (133), Expect = 9e-09
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE +FQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 57.6 bits (133), Expect = 9e-09
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE +FQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 57.6 bits (133), Expect = 9e-09
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE +FQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 57.6 bits (133), Expect = 9e-09
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE +FQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 210 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 268
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 269 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 323
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 57.6 bits (133), Expect = 9e-09
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE +FQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 240 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 298
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 299 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 353
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 57.6 bits (133), Expect = 9e-09
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE +FQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 367
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 56.0 bits (129), Expect = 3e-08
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLGNLEAGLTET-MEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E FR PE MFQPS LG AG+ ET + K + L AN V ++GG++ +PG
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTV-LSGGTTMYPGIAD 312
Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMG 133
+ P K++ W G AS + F+ I+K +Y E G
Sbjct: 313 RMQKEITALAPTMKI-KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/120 (20%), Positives = 53/120 (44%)
Frame = -3
Query: 468 FRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXXXXX 289
FR PE++F+P ++G G+ + + + L +N+ ++GG++ F G
Sbjct: 254 FRAPEVLFKPDLIGTEWPGMAHVVNQSIMKCDVDLRQTLYSNIVLSGGTTLFKGFGDRLL 313
Query: 288 XXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCITKGDYLEMGGEYLKEHY 109
++ P ++ ++ + W G AS + F + K +Y +MG + + +
Sbjct: 314 GEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRF 373
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = -3
Query: 489 LHLAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFP 310
+HL +E F +PE++F PS + + G+ E + + LA N+ + GGSS FP
Sbjct: 263 IHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFP 322
Query: 309 GXXXXXXXXXXEMRPFKSTHKVVM-AKNPSLDAWYGARDFASSN 181
G M P + V NP +W+ ++ +++
Sbjct: 323 GFRERLEREVRSMLPAEYGLNVSNDVINPQTHSWHCGQELLTAS 366
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = -3
Query: 489 LHLAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFP 310
+HL +E F +PE++F PS + + G+ E + + LA N+ + GGSS FP
Sbjct: 263 IHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFP 322
Query: 309 GXXXXXXXXXXEMRPFKSTHKVVM-AKNPSLDAWYGARDFASSN 181
G M P + V NP +W+ ++ +++
Sbjct: 323 GFRERLEREVRSMLPAEYGLNVSNDVINPQTHSWHCGQELLTAS 366
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/63 (28%), Positives = 36/63 (57%)
Frame = -3
Query: 495 RQLHLAIEPFRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQ 316
R + L E F PE++FQP ++ +AGL+E + + + +L ++ ++GG++
Sbjct: 250 RVIRLGGERFEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTM 309
Query: 315 FPG 307
+PG
Sbjct: 310 YPG 312
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 34.7 bits (76), Expect = 0.076
Identities = 25/104 (24%), Positives = 45/104 (43%)
Frame = -3
Query: 468 FRVPELMFQPSMLGNLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXXXXX 289
F E +F+P G GL + + + + L N+++ GG+S PG
Sbjct: 433 FLCTEGLFKPKKWGLDTKGLHQLIHEAILQCPIDSRRTLYRNIYLAGGASLMPGIAEKLE 492
Query: 288 XXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCIT 157
+ P +V ++ A+ GA+ AS++ FE+ CI+
Sbjct: 493 QELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCIS 536
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 114 HYASNPYFKSPAPIV--DTTLVPAGDSNVIKEEVIVD 10
H+ S+P F + +P+V D L+PA D V E ++D
Sbjct: 777 HHESSPNFSASSPVVVSDEYLIPATDMEVEMVEEVID 813
>AF408759-1|AAO27838.1| 279|Caenorhabditis elegans LIN-36 protein.
Length = 279
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 114 HYASNPYFKSPAPIV--DTTLVPAGDSNVIKEEVIVD 10
H+ S+P F + +P+V D L+PA D V E ++D
Sbjct: 94 HHESSPNFSASSPVVVSDEYLIPATDMEVEMVEEVID 130
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 114 HYASNPYFKSPAPIV--DTTLVPAGDSNVIKEEVIVD 10
H+ S+P F + +P+V D L+PA D V E ++D
Sbjct: 777 HHESSPNFSASSPVVVSDEYLIPATDMEVEMVEEVID 813
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 29.1 bits (62), Expect = 3.8
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Frame = -3
Query: 474 EPFRVPELMFQPSMLG-NLEAGLTETMEYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
E F PE+ F P +++T++ L + + + L N+ ++GGS+ F
Sbjct: 281 ERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFAR 340
Query: 297 XXXXXXXEM----------------RPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENF 166
+ +P +V+ K W+G AS++ F
Sbjct: 341 KLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQV 400
Query: 165 CITKGDYLEMG 133
TK +Y+E G
Sbjct: 401 SHTKAEYMERG 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,732
Number of Sequences: 27780
Number of extensions: 265995
Number of successful extensions: 769
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -