Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a17
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              49   4e-08
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.80 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = -3

Query: 474 EPFRVPELMFQPSMLGNLEAGLTETM-EYLFKHFTPEEQLLLANNVFITGGSSQFPGXXX 298
           E FR PE +FQPS LG    G+ ET    + K      + L AN V ++GG++ +PG   
Sbjct: 28  ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV-LSGGTTMYPGIAD 86

Query: 297 XXXXXXXEMRPFKSTHKVVMAKNPSLDAWYGARDFASSNAFENFCIT 157
                   + P     K++         W G    AS + F+   I+
Sbjct: 87  RMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 428 PNIDGWNISSGTLKGSIARCSCLSRCLA 511
           PN +G    S   KGSIARC  L    A
Sbjct: 196 PNDEGIETDSDRRKGSIARCWSLDSTAA 223


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 207  GARDFASSNAFENFCITKGDYLEMGGE 127
            G R+ +SSN   NF    GD  E G E
Sbjct: 1045 GYRETSSSNPSYNFSSVSGDGEEGGAE 1071


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 207  GARDFASSNAFENFCITKGDYLEMGGE 127
            G R+ +SSN   NF    GD  E G E
Sbjct: 1041 GYRETSSSNPSYNFSSVSGDGEEGGAE 1067


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 440  HQCWVTWRPDLQKRWN 393
            H   VTW+P  ++ WN
Sbjct: 991  HTLKVTWKPPPREDWN 1006


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 108 RNALSSTLRPFPSNP 152
           RNA   T R  PSNP
Sbjct: 324 RNAFKETCRCSPSNP 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,840
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)