Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a15
(201 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 1.0
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 1.8
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 24 3.2
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 23 4.2
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 23 4.2
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 23 4.2
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 23 4.2
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 23 5.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 7.3
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 23 7.3
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 23 7.3
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 23 7.3
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 23 7.3
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 22 9.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 22 9.7
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 70 ALNRYTSAKAVFVVQIEILLCQR 2
+LNRYTS + V +E ++C++
Sbjct: 33 SLNRYTSGTVLLEVPLENIICRK 55
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 192 LISLLSLHTNGTNALVSLGQ*TNFLCLELVFFTLDIMLLQAL*IGIRVRKPFSSY 28
LIS L NGTN +SL + + V+ +L M+ + L V + FS Y
Sbjct: 1350 LISFTELCKNGTNQKISL---QSLEIIREVYSSLSTMIKEGLSSKPSVNETFSKY 1401
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 68 SACNNIISSVKKTNSKHK 121
SA NN + +KKTN +H+
Sbjct: 869 SAFNNFMKLLKKTNDEHQ 886
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 156 WCRWCGERAKKSN 194
W R G+RA+KSN
Sbjct: 822 WARCTGQRAQKSN 834
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 179 SLSTPTAPTRWYL*ANKQIFCV 114
S+ PTRW AN+ I C+
Sbjct: 394 SMKVDIGPTRWIPTANRTIRCI 415
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +2
Query: 35 ENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESK 184
++G R + + C +++S+ K T K+ +W + L+W + K
Sbjct: 278 DSGERRKEVFEEYCKSVVSTKKITRRKNTLSDFWTLLHSLPSTLLWPQFK 327
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 165 NGTNALVSLGQ*TNFLCLELVFFTL 91
NGT + SL +CLE+ FF L
Sbjct: 234 NGTGWIYSLLNQNVLMCLEMPFFAL 258
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 53 RIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNA 154
+I QS +NI+ S+K T H +Y P+ +
Sbjct: 150 QILAQSDEDNIVMSIKATKFPHFGILYHPESVGS 183
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 5 LAQQYFDLYDENGFRTRIPIQSACNNIIS 91
++Q D+Y+E + IP + AC ++S
Sbjct: 107 VSQDMVDVYNEKFRKMNIPKERACAYVLS 135
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 138 LKIPTRWCRWCGERAKKSN 194
+K+P WC+ G KK+N
Sbjct: 888 VKVPVNWCKMSG--TKKTN 904
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 80 NIISSVKKTNSKHKKFVYW 136
N+I+ VK+ + K ++YW
Sbjct: 50 NVITQVKELDKGPKDYLYW 68
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = -1
Query: 195 SLISLLSLHTNGTNALVSLGQ*TNFLCLELVFFTLDIMLLQAL*IGIRVRKPFSSY 28
S++ L++LHTNG++ + + + + + + D++ + IGI ++ Y
Sbjct: 194 SVMHLIALHTNGSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPY 249
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 62 IQSACNNIISSVKKTNSKHKKFVYWPKDTNALVPLVW 172
++ A + +I+SV + F+ WP + NAL +W
Sbjct: 410 MEYALHMVINSVTLYIFLFRTFI-WPSEPNALQRFMW 445
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -3
Query: 181 ALSPHQRHQRVGIFRPINKFFVF 113
+L+ Q+ Q+ + RP+N F ++
Sbjct: 4 SLTAEQKDQKSSVKRPLNSFMLY 26
>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 73
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 92 LILCYCKRSE*VYECESRFRRTNRNI 15
L+ CYC + EC RF+ ++ ++
Sbjct: 22 LLSCYCVSIYRLEECSGRFKPSSYSL 47
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 34 RKRLSHSYTYSERLQ*HNIKRE 99
RK L+H Y YS ++ N+ E
Sbjct: 839 RKTLAHPYIYSPDIEDRNLPYE 860
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,343
Number of Sequences: 5004
Number of extensions: 14214
Number of successful extensions: 45
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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