Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a15
         (201 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047551-1|AAH47551.1|  601|Homo sapiens polypeptide N-acetylgal...    29   2.8  
AJ626725-1|CAF25036.1|  584|Homo sapiens pp-GalNAc-transferase 1...    29   2.8  
U00788-1|AAB60320.1|  526|Homo sapiens neutrophil oxidase factor...    28   4.8  
M32011-1|AAA36379.1|  526|Homo sapiens neutrophil oxidase factor...    28   4.8  
DQ314879-1|ABC40738.1|  526|Homo sapiens neutrophil cytosolic fa...    28   4.8  
AL137800-6|CAC19686.1|  526|Homo sapiens neutrophil cytosolic fa...    28   4.8  
AL137800-4|CAI19479.1|   56|Homo sapiens neutrophil cytosolic fa...    28   4.8  
AF527950-1|AAM89263.1|  526|Homo sapiens p67phox-like protein pr...    28   4.8  
AB209647-1|BAD92884.1|  598|Homo sapiens Neutrophil cytosol fact...    28   4.8  

>BC047551-1|AAH47551.1|  601|Homo sapiens polypeptide
           N-acetylgalactosaminyltransferase 17 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 29  YDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVP 163
           Y ENGF   +    A    +  ++  N KHK ++    +T+ ++P
Sbjct: 103 YRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLPNTSIIIP 147


>AJ626725-1|CAF25036.1|  584|Homo sapiens pp-GalNAc-transferase 17
           protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 29  YDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALVP 163
           Y ENGF   +    A    +  ++  N KHK ++    +T+ ++P
Sbjct: 86  YRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLPNTSIIIP 130


>U00788-1|AAB60320.1|  526|Homo sapiens neutrophil oxidase factor
           protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPKDTNALVPL 166
           S   +++S   +   +H K  Y P+D+N LVPL
Sbjct: 373 SQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL 405


>M32011-1|AAA36379.1|  526|Homo sapiens neutrophil oxidase factor
           protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPKDTNALVPL 166
           S   +++S   +   +H K  Y P+D+N LVPL
Sbjct: 373 SQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL 405


>DQ314879-1|ABC40738.1|  526|Homo sapiens neutrophil cytosolic
           factor 2 (65kDa, chronic granulomatous disease,
           autosomal  protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPKDTNALVPL 166
           S   +++S   +   +H K  Y P+D+N LVPL
Sbjct: 373 SQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL 405


>AL137800-6|CAC19686.1|  526|Homo sapiens neutrophil cytosolic
           factor 2 (65kDa, chronic granulomatous disease,
           autosomal  protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPKDTNALVPL 166
           S   +++S   +   +H K  Y P+D+N LVPL
Sbjct: 373 SQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL 405


>AL137800-4|CAI19479.1|   56|Homo sapiens neutrophil cytosolic
           factor 2 (65kDa, chronic granulomatous disease,
           autosomal  protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPKDTNALVPL 166
           S   +++S   +   +H K  Y P+D+N LVPL
Sbjct: 24  SQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL 56


>AF527950-1|AAM89263.1|  526|Homo sapiens p67phox-like protein
           protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPKDTNALVPL 166
           S   +++S   +   +H K  Y P+D+N LVPL
Sbjct: 373 SQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL 405


>AB209647-1|BAD92884.1|  598|Homo sapiens Neutrophil cytosol factor
           2 variant protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPKDTNALVPL 166
           S   +++S   +   +H K  Y P+D+N LVPL
Sbjct: 445 SQVRDMVSKKLELRLEHTKLSYRPRDSNELVPL 477


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,441,114
Number of Sequences: 237096
Number of extensions: 455911
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 76,859,062
effective HSP length: 45
effective length of database: 66,189,742
effective search space used: 1389984582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)