Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a15
         (201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    28   0.79 
Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    28   1.0  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    28   1.0  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      27   1.8  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF077540-1|ABC71801.1|  422|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical p...    25   9.8  
Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical p...    25   9.8  
Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 68  SACNNIISSVKKTNSKHKKFVYWPK 142
           SAC+N    ++  N+  + F YWP+
Sbjct: 29  SACSNFFQFIRLNNNVMESFEYWPR 53


>Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical
           protein F09B9.5 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 89  SSVKKTNSKHKKFVY----WPKDTNALVPLVWRESKEI 190
           S V+    +H+K+ Y    W   TN    ++WR +KEI
Sbjct: 76  SVVEHWYQEHEKYEYETPGWQTGTNYFTQVIWRSTKEI 113


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 56   IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 160
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 56   IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 160
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 17  YFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF---VYWPKDT 148
           Y DL+DEN FRT   + +A  +  SS ++      KF   V W ++T
Sbjct: 664 YIDLHDENNFRTSSSLSTA--STTSSFQRRILPGAKFFVHVVWGEET 708


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 17  YFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF---VYWPKDT 148
           Y DL+DEN FRT   + +A  +  SS ++      KF   V W ++T
Sbjct: 664 YIDLHDENNFRTSSSLSTA--STTSSFQRRILPGAKFFVHVVWGEET 708


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 85  NIKREKD*FQTQKICLLA*RYQRVGAVGVEREQRN 189
           N+K   D   T+K+CL+   YQ++   G  R  RN
Sbjct: 514 NVKSSSDHGATEKLCLICQTYQKL--TGNVRPARN 546


>AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical
           protein T07H3.3a protein.
          Length = 362

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 26  LYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYW 136
           L  ENG R  + ++ AC ++ISS +  N + K  + W
Sbjct: 201 LVSENGNRFAVKLKDACFDLISS-ETYNCQGKFILEW 236


>AF077540-1|ABC71801.1|  422|Caenorhabditis elegans Hypothetical
           protein T07H3.3b protein.
          Length = 422

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 26  LYDENGFRTRIPIQSACNNIISSVKKTNSKHKKFVYW 136
           L  ENG R  + ++ AC ++ISS +  N + K  + W
Sbjct: 201 LVSENGNRFAVKLKDACFDLISS-ETYNCQGKFILEW 236


>Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.13b protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 53  RIPIQSACNNIISSVKKTNS-KHKKFVYWPKDTNALVPLV 169
           R  I   C N   +   T+S  HK F  +PK   AL+P V
Sbjct: 302 RFIIMFVCINQTFAALITHSWYHKTFPKYPKSRKALIPYV 341


>Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical
           protein B0024.13a protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 53  RIPIQSACNNIISSVKKTNS-KHKKFVYWPKDTNALVPLV 169
           R  I   C N   +   T+S  HK F  +PK   AL+P V
Sbjct: 269 RFIIMFVCINQTFAALITHSWYHKTFPKYPKSRKALIPYV 308


>Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical
           protein F59F5.8 protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 80  NIISSVKKTNSKHKKFVYWPKDTNALVP 163
           NI+S+  K ++  K   +W + T  L+P
Sbjct: 37  NIVSNTSKCDANTKIEQFWLRSTTGLIP 64


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 129 TNFLCLELVFFTLDIMLLQAL*IGIRVRKPFSSYKSKYCC 10
           TNFL  EL     +I++ +A+   IR   P +SY+++  C
Sbjct: 97  TNFLRRELSQSDNEILISRAIDRSIRPLLPGNSYETQIIC 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,751,051
Number of Sequences: 27780
Number of extensions: 78394
Number of successful extensions: 240
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)