Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a15
(201 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 20 2.4
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 20 2.4
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 19 4.3
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 19 4.3
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 19 5.6
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 19 5.6
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 19 5.6
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 19 5.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 19 5.6
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 19 7.4
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 19 7.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 19 7.4
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 19 7.4
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 19 7.4
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 19 7.4
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 19 7.4
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 19 7.4
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 18 9.8
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 20.2 bits (40), Expect = 2.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +2
Query: 29 YDENGF--RTRIPIQSACNNIISSVKKTNSKHKKFVYWPKDTN 151
+D+ G T + S + + SVK F WP DT+
Sbjct: 139 FDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTH 181
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 20.2 bits (40), Expect = 2.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 1 FAGTTIFRFVRRKRLSHSYTYSER 72
FAGT F ++ + YTY R
Sbjct: 10 FAGTVAADFQHNWQVGNEYTYLVR 33
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 19.4 bits (38), Expect = 4.3
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -3
Query: 184 FALSPHQRH 158
F ++PHQ+H
Sbjct: 615 FVINPHQQH 623
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 19.4 bits (38), Expect = 4.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 183 LLSLHTNGTNALVSLGQ*TNFLCLELVFFTLDIMLL 76
LLS G NAL + GQ L VF L++ L
Sbjct: 52 LLSAFLFGANALFTPGQELPARGLTAVFLGLNLGFL 87
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 38 NGFRTRIPIQS 70
NGFR+ +P+ S
Sbjct: 348 NGFRSTLPVVS 358
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 38 NGFRTRIPIQS 70
NGFR+ +P+ S
Sbjct: 317 NGFRSTLPVVS 327
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 38 NGFRTRIPIQS 70
NGFR+ +P+ S
Sbjct: 368 NGFRSTLPVVS 378
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 38 NGFRTRIPIQS 70
NGFR+ +P+ S
Sbjct: 317 NGFRSTLPVVS 327
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 19.0 bits (37), Expect = 5.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 114 LELVFFTLDIMLLQAL*IGIRV 49
LE + +TLD + Q + G+R+
Sbjct: 146 LEAMLYTLDKLNTQDIVPGVRI 167
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 18.6 bits (36), Expect = 7.4
Identities = 6/15 (40%), Positives = 8/15 (53%)
Frame = -1
Query: 45 KPFSSYKSKYCCASE 1
KPF K Y C ++
Sbjct: 15 KPFKCEKCSYSCVNK 29
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3
Query: 187 FFALSPHQRHQRVGIFR 137
F ++ RHQ V +FR
Sbjct: 95 FTMMNKEMRHQAVVLFR 111
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 18.6 bits (36), Expect = 7.4
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -1
Query: 126 NFLCLELVF 100
NF C+++VF
Sbjct: 199 NFTCIQIVF 207
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3
Query: 187 FFALSPHQRHQRVGIFR 137
F ++ RHQ V +FR
Sbjct: 95 FTMMNKEMRHQAVVLFR 111
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 18.6 bits (36), Expect = 7.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Frame = +3
Query: 153 RWCRWCGERAKKSNCL 200
RWC W +K L
Sbjct: 387 RWCTWSEGDLEKCKAL 402
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 18.6 bits (36), Expect = 7.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Frame = +3
Query: 153 RWCRWCGERAKKSNCL 200
RWC W +K L
Sbjct: 387 RWCTWSEGDLEKCKAL 402
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 18.6 bits (36), Expect = 7.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Frame = +3
Query: 153 RWCRWCGERAKKSNCL 200
RWC W +K L
Sbjct: 387 RWCTWSEGDLEKCKAL 402
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 77 NNIISSVKKTNSKHKK 124
N++ S+ TNS H+K
Sbjct: 343 NHLNSTCSVTNSPHQK 358
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 143 DTNALVPLVW 172
DT L+P VW
Sbjct: 219 DTEGLLPPVW 228
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,447
Number of Sequences: 438
Number of extensions: 927
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used: 2659293
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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