Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a14
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.6  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    25   8.6  
SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   8.6  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 164 ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 69
           ERG T  PK   K+   K  I A +  +TTA+
Sbjct: 17  ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 571 LNTLLSEITDSLPDLTLMLDKLAEQLLEAIN 479
           L+T + E  DS  + +L L+   EQ+++A+N
Sbjct: 108 LHTTILEEGDSYQESSLSLEAAVEQIVQAVN 138


>SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -2

Query: 694 KLNLNQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLL---SEITDSLPDLT 524
           K  +++ NQ L  SN  + +   +  LL+  +   +  L  LN  +   SE+   LP + 
Sbjct: 16  KSPIDKLNQLLPESNDPSILYETSQHLLSEFDKTLNDSLRVLNQQINQVSEVLPRLPTMI 75

Query: 523 LMLDKLAEQLLEAINTM 473
             LD+ +++L E+   M
Sbjct: 76  SALDRESKRLFESCEKM 92


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 444 LFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITSLAV 599
           LFN   C C +      + + +LS++S K  NE     +++++ V   ++ V
Sbjct: 469 LFNICDCPCVVFPFTKVDANIDLSDVSYKPLNEEDKENNDMYDPVLFDNMPV 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,929
Number of Sequences: 5004
Number of extensions: 49815
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)