Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a13
         (811 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    31   2.5  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    31   2.5  
AY089234-1|AAL89972.1|  355|Drosophila melanogaster AT02512p pro...    29   5.7  
AL009192-1|CAA15687.1|  326|Drosophila melanogaster EG:133E12.3 ...    29   5.7  
AE014298-307|AAF45703.2|  355|Drosophila melanogaster CG4406-PA ...    29   5.7  
AY070561-1|AAL48032.1|  538|Drosophila melanogaster LD37523p pro...    29   9.9  
AE014297-149|AAF52095.1|  538|Drosophila melanogaster CG2503-PA ...    29   9.9  

>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 369   NCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAY 190
             N N+R + T+    +K  T+S      ++PD+   L D+ +TE + T  L + L  E   
Sbjct: 15052 NTNLRDSGTYTCKVKKQETQSTVEVLQRKPDFIKVLEDYEVTEKD-TAILDVELTTEATE 15110

Query: 189   LHYY 178
             + +Y
Sbjct: 15111 VTWY 15114


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
             isoform C protein.
          Length = 18074

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -2

Query: 369   NCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAY 190
             N N+R + T+    +K  T+S      ++PD+   L D+ +TE + T  L + L  E   
Sbjct: 16911 NTNLRDSGTYTCKVKKQETQSTVEVLQRKPDFIKVLEDYEVTEKD-TAILDVELTTEATE 16969

Query: 189   LHYY 178
             + +Y
Sbjct: 16970 VTWY 16973


>AY089234-1|AAL89972.1|  355|Drosophila melanogaster AT02512p
           protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 144 CNIQTPRNF*KYNNANRHVRRSATELDIEW 233
           CN + PR    YNNAN+H+     ++++++
Sbjct: 93  CNARNPRPGQVYNNANQHINVYGDDVEVDY 122


>AL009192-1|CAA15687.1|  326|Drosophila melanogaster EG:133E12.3
           protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 144 CNIQTPRNF*KYNNANRHVRRSATELDIEW 233
           CN + PR    YNNAN+H+     ++++++
Sbjct: 93  CNARNPRPGQVYNNANQHINVYGDDVEVDY 122


>AE014298-307|AAF45703.2|  355|Drosophila melanogaster CG4406-PA
           protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 144 CNIQTPRNF*KYNNANRHVRRSATELDIEW 233
           CN + PR    YNNAN+H+     ++++++
Sbjct: 93  CNARNPRPGQVYNNANQHINVYGDDVEVDY 122


>AY070561-1|AAL48032.1|  538|Drosophila melanogaster LD37523p
           protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 589 CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVFAERQFKFSEF--HSFLNCLDFLNQ 759
           C   +G NLP + F  K+ Q      +  +++    ER FK+     H     +D +N+
Sbjct: 30  CRVKYGNNLPDIPFDLKFLQYPFDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINR 88


>AE014297-149|AAF52095.1|  538|Drosophila melanogaster CG2503-PA
           protein.
          Length = 538

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 589 CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVFAERQFKFSEF--HSFLNCLDFLNQ 759
           C   +G NLP + F  K+ Q      +  +++    ER FK+     H     +D +N+
Sbjct: 30  CRVKYGNNLPDIPFDLKFLQYPFDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINR 88


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,178,391
Number of Sequences: 53049
Number of extensions: 678410
Number of successful extensions: 1612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)