Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a12
         (413 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         25   1.4  
AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    24   1.9  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   4.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   4.4  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   4.4  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   4.4  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    23   4.4  
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    23   5.8  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       22   7.7  
AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.            22   7.7  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    22   7.7  

>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 130 GPKSAAKHGHGSVGK 86
           GP+ A +H H SVGK
Sbjct: 73  GPRPAVRHLHSSVGK 87


>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 3   FWYTCCNYQLSHILFCITIQRC 68
           F    C Y  S++L C+++ RC
Sbjct: 155 FMRAFCLYLSSNVLVCVSLDRC 176


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 6   WYTCCNYQLSHILFCITIQR 65
           +YTCC+     I F IT++R
Sbjct: 222 FYTCCDEPYLDITFNITMRR 241


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 6   WYTCCNYQLSHILFCITIQR 65
           +YTCC+     I F IT++R
Sbjct: 222 FYTCCDEPYLDITFNITMRR 241


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 6   WYTCCNYQLSHILFCITIQR 65
           +YTCC+     I F IT++R
Sbjct: 218 FYTCCDEPYLDITFNITMRR 237


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 6   WYTCCNYQLSHILFCITIQR 65
           +Y+CC      I+F IT++R
Sbjct: 218 FYSCCEEPYPDIIFNITLRR 237


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 191 FFKYVL*MYFTSRFLSALGTSNTL-AVRCIMLKINSADAELY 313
           FFK  L    +S +L+ALG S+T   +   +  +N  D ++Y
Sbjct: 145 FFKTKLRKLSSSYYLAALGLSDTFYLIGQFVAWLNLVDLKIY 186


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 158 MAIVWPLWCWTEISCKTRTWKCWKV*NT 75
           + + W +    E+  + + +KCWKV +T
Sbjct: 259 LKVGWSICHIREVMEEQKCYKCWKVGHT 286


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 NNRHCNTSHLQLHCNFSNMYYK 212
           + +HC    +Q  C F++ +Y+
Sbjct: 180 SEQHCCPQCVQSQCKFNDQFYR 201


>AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.
          Length = 1152

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 125 RSNTTTAKQSPLQHIAPSITL 187
           R+N T+   + LQ +AP+IT+
Sbjct: 538 RNNITSLTYANLQFLAPAITV 558


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 373 CEECGVTHKMPGCAKNKP 320
           C  CG+ HKM G   N+P
Sbjct: 141 CNACGLYHKMNG--MNRP 156


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,096
Number of Sequences: 2352
Number of extensions: 10659
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 33777477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)