Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a11
         (816 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    25   2.1  
Z22930-7|CAA80512.1|  274|Anopheles gambiae trypsin protein.           23   8.5  
Z18889-1|CAA79327.1|  274|Anopheles gambiae trypsin protein.           23   8.5  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    23   8.5  

>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = -2

Query: 590 VTHQLPANVHQIRVTAIDIHPDNSLMASISTDGKVILTTTSNGKIVGELQTENDLETVAF 411
           +TH        +  T ID+  +NS +  ++ + +  +T     K+  EL+    +E  A 
Sbjct: 44  ITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSAL 103

Query: 410 AQ 405
            Q
Sbjct: 104 TQ 105


>Z22930-7|CAA80512.1|  274|Anopheles gambiae trypsin protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 255 QIVFHPKHFSNSVDF 299
           ++V HPK+ S+S+DF
Sbjct: 118 RVVQHPKYDSSSIDF 132


>Z18889-1|CAA79327.1|  274|Anopheles gambiae trypsin protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 255 QIVFHPKHFSNSVDF 299
           ++V HPK+ S+S+DF
Sbjct: 118 RVVQHPKYDSSSIDF 132


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 600 FNIPRFDCTIFIASSHSDT 656
           +N+PRF     I+S+H DT
Sbjct: 221 YNLPRFWEVTLISSTHPDT 239


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 893,158
Number of Sequences: 2352
Number of extensions: 18913
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)