Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a11
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   3.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 184 VKITHCSPDLPSYARMEPSRHPVIRLFFTQNILVTPLTSFSGFVH 318
           V ++ CSP      +  P +HPVI L   Q++  + L +   F++
Sbjct: 48  VVLSACSPYFRELLKSTPCKHPVIVL---QDVAFSDLHALVEFIY 89


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 206 GEQCVILTGHRSEILDLCYNAKENLILST 120
           G +C   T  ++ I+D+ YNA  N ++ T
Sbjct: 68  GSEC---TTRKTRIIDVVYNASNNELVRT 93


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 467 NGKIVGELQTEND 429
           NGKI+ ELQT+ D
Sbjct: 105 NGKILRELQTDYD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,150
Number of Sequences: 438
Number of extensions: 5259
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)