Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a09
         (427 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.53 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   3.8  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   3.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   3.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   8.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 140 TFRVAPTPRRPRSLQGHDEEETEIKELLQAGTSRSPTKTYRNLSK 6
           +F ++    RPRSLQ  D E   ++E + +         Y+N ++
Sbjct: 182 SFYISDKAARPRSLQFVDSEGNILEEFVLSRAGGLVNSLYQNATR 226


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  TSWSVTLMSRLEVAL*FPFLLHHDPGGCEGAAVLE 127
           T+W  TL+ + ++   F  L+H D    E + V++
Sbjct: 91  TTWICTLLKKDKLLELFKRLIHFDTKCQENSTVID 125


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  TSWSVTLMSRLEVAL*FPFLLHHDPGGCEGAAVLE 127
           T+W  TL+ + ++   F  L+H D    E + V++
Sbjct: 109 TTWICTLLKKDKLLELFKRLIHFDTKCQENSTVID 143


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 178 LRRVAPAVNLL--RERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHRPRRTEIY 11
           +RR A   N L   ER   +  +   A  R  +KK+ ++     P + GH  ++  I+
Sbjct: 183 IRRKAELANSLGLSERQVKIWFQNRRAKERKQVKKREEVTQKDSPMNMGHLTQQQIIH 240


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 85  KKKRKLKSYFKPGHQGHRPRRTEI 14
           K+KR   S    G    RPR +++
Sbjct: 42  KRKRSTSSQSTEGENDARPRASQV 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,310
Number of Sequences: 336
Number of extensions: 571
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)