Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a09
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0284 - 28943527-28943625,28944417-28944785                       32   0.22 
06_03_0496 - 21415596-21416068,21416618-21417224                       27   4.8  
02_02_0655 - 12679230-12679676                                         27   6.3  
01_03_0108 - 12628711-12629178                                         27   8.3  

>05_07_0284 - 28943527-28943625,28944417-28944785
          Length = 155

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 125 PTPRRPRSLQGHDEEETEIKELLQAGT--SRSPTKTYRNLS 9
           P P   R  Q  DE    + EL QAG   SRSPT++ R++S
Sbjct: 33  PPPSTGRKRQREDEFVPSVTELEQAGVHFSRSPTRSLRDIS 73


>06_03_0496 - 21415596-21416068,21416618-21417224
          Length = 359

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 184 GDLRRVAPAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHRPR 26
           G  R  AP V+L  +  E++  RGA A+ R + ++   L+     G +   PR
Sbjct: 11  GGRRSTAPPVSLSGDSPEAVLGRGAAASDRTVSRRHVALRLLGGGGDEEEEPR 63


>02_02_0655 - 12679230-12679676
          Length = 148

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 116 RRPRSLQGHDEEETEIK 66
           RR +S++GHDEEE +++
Sbjct: 38  RRAQSMRGHDEEEEDLR 54


>01_03_0108 - 12628711-12629178
          Length = 155

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 82  KKRKLKSYFKPGHQGHRPRRTEI 14
           KKRK K+Y KP  Q H+ ++ ++
Sbjct: 78  KKRKKKTYTKPKKQKHKHKKVKL 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,287,832
Number of Sequences: 37544
Number of extensions: 79016
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)