Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a09
         (427 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    25   0.85 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   4.5  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    23   4.5  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   6.0  

>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 0.85
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 139 RFESLQHRGALAASRVMMKKKRKLKSYFK 53
           +FE L+HR   A  R M +   ++++YF+
Sbjct: 145 KFEHLRHRTMRAVKRKMDELNEQIRTYFQ 173


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 128  APTPRRPRSLQGHDEEETEIKELLQAGTSRSPT 30
            AP P +  S    +  ET   E +  G  R+PT
Sbjct: 950  APAPAKTTSTDSTNGLETPTSETVGGGMHRTPT 982


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 166 APAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGH 35
           APA+NL ++R      RG +A  R       + K+  + G +GH
Sbjct: 354 APAINLQQQRCYRCLERGHIA--RECRSPVDRQKACIRCGAEGH 395


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 181  DLRRVAPAVNLLRERFESLQHRGALAASRVMMKKKR-KLKSYFKPGHQGHRPRRTE 17
            DLR VA     +R+R E    R ++ +S     ++R  +++      Q HR  + +
Sbjct: 1052 DLRNVARRTQTVRQREEQCGERPSMPSSSPRTSERRANIRARMARLRQRHRQHQQD 1107


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,037
Number of Sequences: 2352
Number of extensions: 2242
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 34867302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)