Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a09
(427 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC014009-1|AAH14009.2| 476|Homo sapiens GLTSCR2 protein protein. 32 0.93
BC010095-1|AAH10095.1| 478|Homo sapiens glioma tumor suppressor... 32 0.93
BC007248-1|AAH07248.1| 474|Homo sapiens glioma tumor suppressor... 32 0.93
BC006311-1|AAH06311.1| 478|Homo sapiens glioma tumor suppressor... 32 0.93
BC004229-1|AAH04229.2| 472|Homo sapiens GLTSCR2 protein protein. 32 0.93
AY535000-1|AAS46028.1| 478|Homo sapiens preS1 binding protein p... 32 0.93
AL359336-1|CAB94787.1| 467|Homo sapiens GLTSCR2, glioma tumor ... 32 0.93
AL359335-1|CAB94786.1| 459|Homo sapiens GLTSCR2, glioma tumor ... 32 0.93
AF182076-1|AAF62873.1| 478|Homo sapiens glioma tumor suppressor... 32 0.93
AY359881-1|AAQ63404.1| 1504|Homo sapiens KIAA0586 isoform protein. 29 5.0
AB011158-1|BAA25512.2| 1576|Homo sapiens KIAA0586 protein protein. 29 5.0
>BC014009-1|AAH14009.2| 476|Homo sapiens GLTSCR2 protein protein.
Length = 476
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 426 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 464
>BC010095-1|AAH10095.1| 478|Homo sapiens glioma tumor suppressor
candidate region gene 2 protein.
Length = 478
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466
>BC007248-1|AAH07248.1| 474|Homo sapiens glioma tumor suppressor
candidate region gene 2 protein.
Length = 474
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 424 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 462
>BC006311-1|AAH06311.1| 478|Homo sapiens glioma tumor suppressor
candidate region gene 2 protein.
Length = 478
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466
>BC004229-1|AAH04229.2| 472|Homo sapiens GLTSCR2 protein protein.
Length = 472
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 422 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 460
>AY535000-1|AAS46028.1| 478|Homo sapiens preS1 binding protein
protein.
Length = 478
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466
>AL359336-1|CAB94787.1| 467|Homo sapiens GLTSCR2, glioma tumor
suppressor candidate region protein 2 (AF182076_1)
protein.
Length = 467
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 417 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 455
>AL359335-1|CAB94786.1| 459|Homo sapiens GLTSCR2, glioma tumor
suppressor candidate region protein 2 (AF182076_1)
protein.
Length = 459
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 409 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 447
>AF182076-1|AAF62873.1| 478|Homo sapiens glioma tumor suppressor
candidate region protein 2 protein.
Length = 478
Score = 31.9 bits (69), Expect = 0.93
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 LRRVAPAVNLLRERFESLQHRGAL-AASRVMMKKKRKLK 65
LR + P N+LR+RF+S Q R + R K+K K+K
Sbjct: 428 LRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVK 466
>AY359881-1|AAQ63404.1| 1504|Homo sapiens KIAA0586 isoform protein.
Length = 1504
Score = 29.5 bits (63), Expect = 5.0
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -1
Query: 172 RVAPAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHR 32
R PA +L +ER E G L A+ V+ + L+ Y KP +QGHR
Sbjct: 571 RGMPASSLQKERKE-----GLLKATTVIQDEDYMLQVYGKPVYQGHR 612
>AB011158-1|BAA25512.2| 1576|Homo sapiens KIAA0586 protein protein.
Length = 1576
Score = 29.5 bits (63), Expect = 5.0
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -1
Query: 172 RVAPAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHR 32
R PA +L +ER E G L A+ V+ + L+ Y KP +QGHR
Sbjct: 643 RGMPASSLQKERKE-----GLLKATTVIQDEDYMLQVYGKPVYQGHR 684
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,678,187
Number of Sequences: 237096
Number of extensions: 404715
Number of successful extensions: 1860
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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