Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a09
         (427 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051518-1|AAK92942.1|  478|Drosophila melanogaster GH17311p pro...    39   0.003
AE014298-1225|AAF46409.1|  478|Drosophila melanogaster CG1785-PA...    39   0.003
EF439708-1|ABO38128.1| 1051|Drosophila melanogaster Ephexin prot...    27   7.9  
AF145619-1|AAD38594.1| 1051|Drosophila melanogaster BcDNA.GH0369...    27   7.9  
AE014296-2852|AAN11725.1| 1051|Drosophila melanogaster CG3799-PC...    27   7.9  
AE014296-2851|AAN11724.1| 1051|Drosophila melanogaster CG3799-PB...    27   7.9  
AE014296-2850|AAF49386.1| 1051|Drosophila melanogaster CG3799-PA...    27   7.9  

>AY051518-1|AAK92942.1|  478|Drosophila melanogaster GH17311p
           protein.
          Length = 478

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = -1

Query: 187 SGDLRRVAPAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQ 41
           +G+LR V    +LL++RF +LQ    L  ++++ +KK K+K + +  H+
Sbjct: 402 AGNLRNVKTESSLLKDRFHTLQRNNMLPTTKLVSRKKSKVKRFERNSHK 450


>AE014298-1225|AAF46409.1|  478|Drosophila melanogaster CG1785-PA
           protein.
          Length = 478

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = -1

Query: 187 SGDLRRVAPAVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQ 41
           +G+LR V    +LL++RF +LQ    L  ++++ +KK K+K + +  H+
Sbjct: 402 AGNLRNVKTESSLLKDRFHTLQRNNMLPTTKLVSRKKSKVKRFERNSHK 450


>EF439708-1|ABO38128.1| 1051|Drosophila melanogaster Ephexin
           protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 160 AVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHRPRRTEI 14
           ++NLLR  F  + H   L +S +  K ++ L SY  P H+      TE+
Sbjct: 615 SLNLLRRHF--MNHNAFLDSSVLSAKDRKALFSYIVPVHECSERLLTEL 661


>AF145619-1|AAD38594.1| 1051|Drosophila melanogaster BcDNA.GH03693
           protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 160 AVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHRPRRTEI 14
           ++NLLR  F  + H   L +S +  K ++ L SY  P H+      TE+
Sbjct: 615 SLNLLRRHF--MNHNAFLDSSVLSAKDRKALFSYIVPVHECSERLLTEL 661


>AE014296-2852|AAN11725.1| 1051|Drosophila melanogaster CG3799-PC,
           isoform C protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 160 AVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHRPRRTEI 14
           ++NLLR  F  + H   L +S +  K ++ L SY  P H+      TE+
Sbjct: 615 SLNLLRRHF--MNHNAFLDSSVLSAKDRKALFSYIVPVHECSERLLTEL 661


>AE014296-2851|AAN11724.1| 1051|Drosophila melanogaster CG3799-PB,
           isoform B protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 160 AVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHRPRRTEI 14
           ++NLLR  F  + H   L +S +  K ++ L SY  P H+      TE+
Sbjct: 615 SLNLLRRHF--MNHNAFLDSSVLSAKDRKALFSYIVPVHECSERLLTEL 661


>AE014296-2850|AAF49386.1| 1051|Drosophila melanogaster CG3799-PA,
           isoform A protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 160 AVNLLRERFESLQHRGALAASRVMMKKKRKLKSYFKPGHQGHRPRRTEI 14
           ++NLLR  F  + H   L +S +  K ++ L SY  P H+      TE+
Sbjct: 615 SLNLLRRHF--MNHNAFLDSSVLSAKDRKALFSYIVPVHECSERLLTEL 661


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,142,822
Number of Sequences: 53049
Number of extensions: 127068
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)