Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a08
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 143 3e-35
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 117 2e-27
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 111 1e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 104 1e-23
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 95 8e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 90 3e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 89 5e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 87 3e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 81 1e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 80 4e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 79 6e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 77 3e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 76 5e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 5e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 72 8e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 71 3e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 70 3e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 69 1e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 68 1e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 64 3e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 63 4e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 62 1e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 3e-09
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 53 4e-08
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 49 9e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 46 6e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 46 6e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 45 1e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 44 3e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.009
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.33
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.4
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 28 1.8
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 28 1.8
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 3.1
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 27 4.1
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 7.2
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 7.2
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 7.2
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 7.2
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 7.2
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 143 bits (346), Expect = 3e-35
Identities = 61/105 (58%), Positives = 86/105 (81%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HGDK Q ERD VL +F+ G++ I+VATDVA+RG+DV GI +V N+D+P ++EDY+HRIG
Sbjct: 399 IHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIG 458
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 477
RTGR+ +KGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 459 RTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 117 bits (281), Expect = 2e-27
Identities = 54/105 (51%), Positives = 75/105 (71%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HGD+TQ+ER+ L F+ GR SI+VAT VA+RGLD+ + +VIN+D P +DY+HRIG
Sbjct: 460 IHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIG 519
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 477
RTGR+ + G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 520 RTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 111 bits (267), Expect = 1e-25
Identities = 51/97 (52%), Positives = 70/97 (72%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HGD +Q R + L FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HRIG
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIG 505
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQII 501
RTGR+ +KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 506 RTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 104 bits (250), Expect = 1e-23
Identities = 44/107 (41%), Positives = 67/107 (62%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HG K Q +RD + +K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 471
RTGR+ G + F TP + A D+ L+ + Q + +LQ++A +
Sbjct: 758 RTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 95.5 bits (227), Expect = 8e-21
Identities = 41/93 (44%), Positives = 62/93 (66%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HG+ Q +R+E L +F++G +L+ATD+ ARG+D G+K VINFD+P S YIHRIG
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 513
RTGR+ + G + FFT + K + V++ +
Sbjct: 378 RTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSS 410
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 90.2 bits (214), Expect = 3e-19
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
MHG+ Q+ERD ++ F++G + +L+ TD+ ARG+DV + VIN+D P + E+YIHRIG
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIG 349
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDL 534
R+GR KG + F T + R +D+
Sbjct: 350 RSGRFGRKGVAINFVTNEDVRILRDI 375
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 89.4 bits (212), Expect = 5e-19
Identities = 39/86 (45%), Positives = 57/86 (66%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
MHGD Q +RD ++++F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIG
Sbjct: 288 MHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIG 347
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDL 534
R GR KG S F T + R +++
Sbjct: 348 RGGRFGRKGVSINFVTNDDVRMMREI 373
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 87.0 bits (206), Expect = 3e-18
Identities = 38/93 (40%), Positives = 58/93 (62%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HG K+Q++R+ + Q + A ILVATD+A RG+D+ + V+N++ S EDY HRIG
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIG 605
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 513
RTGR+ GT+ F P ++ DL +L +
Sbjct: 606 RTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRS 638
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 81.4 bits (192), Expect = 1e-16
Identities = 37/76 (48%), Positives = 50/76 (65%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+H + Q+ER L +F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+G
Sbjct: 288 LHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVG 347
Query: 611 RTGRSKSKGTSYAFFT 564
RT R+ G S + T
Sbjct: 348 RTARAGRSGESISIVT 363
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 79.8 bits (188), Expect = 4e-16
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HG +Q R L +FK G S LVATDVAARGLD+ + VIN+D P S+ YIHR+G
Sbjct: 315 LHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVG 374
Query: 611 RTGRSKSKGTSYAFFT 564
RT R+ G S A T
Sbjct: 375 RTARAGRAGKSIALVT 390
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 79.4 bits (187), Expect = 6e-16
Identities = 37/95 (38%), Positives = 54/95 (56%)
Frame = -2
Query: 794 CMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 615
C+HG Q+ER + FK+ I VATDV RG+D++ + VIN+D P+S + Y+HR+
Sbjct: 324 CIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRV 383
Query: 614 GRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEAN 510
GR GR +KG + F + Q D + E N
Sbjct: 384 GRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVN 418
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 77.0 bits (181), Expect = 3e-15
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HG + QQ R ++F IL+ T+VAARGLD+ + +++ +D P+ DYIHR+G
Sbjct: 366 LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG 425
Query: 611 RTGR-SKSKGTSYAFFTPS 558
RT R +K G S F PS
Sbjct: 426 RTARGTKGTGKSLMFLAPS 444
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 76.2 bits (179), Expect = 5e-15
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HG +Q++R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+G
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 611 RTGRSKSKG 585
RT R+ G
Sbjct: 594 RTARAGRSG 602
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 72.9 bits (171), Expect = 5e-14
Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRAS---ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 621
+HG +QQ R L F S IL+ TDVAARGLD+ + V+ +D P S++DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 620 RIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 495
RIGRT R+ G + F P S L S + AN + P
Sbjct: 533 RIGRTARAGHNGAAIMFLLPKESEYINLLKSSV-SANILEQP 573
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 72.1 bits (169), Expect = 8e-14
Identities = 29/75 (38%), Positives = 46/75 (61%)
Frame = -2
Query: 788 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 609
H Q R+ V + F+ G LV +D+ RG+D+ + VINFD+P ++E Y+HRIGR
Sbjct: 312 HAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGR 371
Query: 608 TGRSKSKGTSYAFFT 564
+GR +G + +F +
Sbjct: 372 SGRFGHRGLAISFIS 386
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 70.5 bits (165), Expect = 3e-13
Identities = 32/86 (37%), Positives = 50/86 (58%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+H Q++R + L +FK +LV TDVAARG+D+ + +VI++ P++++ Y+HR G
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSG 478
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDL 534
RT R+ G S P Q K L
Sbjct: 479 RTARANEDGVSILMCGPKELSQLKRL 504
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 70.1 bits (164), Expect = 3e-13
Identities = 34/88 (38%), Positives = 44/88 (50%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+HG + Q R EV +F R +L TD+ ARGLD + +VI D P + YIHR+G
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVS 528
RT R G + PS K L S
Sbjct: 375 RTARYNRSGNALLLLLPSEEAFLKRLES 402
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 68.5 bits (160), Expect = 1e-12
Identities = 33/106 (31%), Positives = 60/106 (56%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
++G Q+ R + F+ G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+G
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 611 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 474
RT R+ G +Y+ ++ DL L S Q+++ +D
Sbjct: 436 RTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 68.1 bits (159), Expect = 1e-12
Identities = 30/72 (41%), Positives = 45/72 (62%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
+H T +R + F++ ++ IL ATDV ARG+D I V+ P++++DYIHRIG
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIG 382
Query: 611 RTGRSKSKGTSY 576
RTGR+ G +Y
Sbjct: 383 RTGRAGKTGEAY 394
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = -2
Query: 776 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 597
++ ER +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 596 KSKGTSYAFFTPSNSRQAKDLVSVLQ 519
+G ++ LV L+
Sbjct: 532 GREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = -2
Query: 794 CMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYP------NSSE 633
C+ G+ +RD ++ F+ G + +LV T+V ARG+DV + V+N+D P +
Sbjct: 381 CLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQ 440
Query: 632 DYIHRIGRTGRSKSKGTSYAF 570
Y+HRIGRTGR G S F
Sbjct: 441 TYLHRIGRTGRFGRVGVSINF 461
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 61.7 bits (143), Expect = 1e-10
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = -2
Query: 803 QLXCMHGDKTQQERDEVLYQFKEG-RASILVATDVAARGLDVDGIKYVINFDYPNSSEDY 627
++ +HG + Q R +FK+ + ++L TD+A+RGLD+ + +V+ D P + +
Sbjct: 284 EIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
Query: 626 IHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSV 525
HR GR GR+ G + + ++L+ V
Sbjct: 344 SHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -2
Query: 698 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 555
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 53.2 bits (122), Expect = 4e-08
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Frame = -2
Query: 776 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 597
+Q+ ++E + QF++G + L+AT + GLD+ + +I +D S + R+GRTGR
Sbjct: 477 SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR- 535
Query: 596 KSKGTSYAFFTPSNS----RQAKDLVSVLQEANQIISPQLQSMADR 471
K KG Y T +AKD LQ+ I+S + S++++
Sbjct: 536 KRKGYIYMLLTRGKEEAKWERAKDAYRTLQD--NIVSGRGLSLSEK 579
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 48.8 bits (111), Expect = 9e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = -2
Query: 773 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 594
Q ++ E + QF+ G + LVAT + GLD+ +I +D +S I R+GRTGR K
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKK 576
Query: 593 S 591
S
Sbjct: 577 S 577
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -2
Query: 785 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 611 RTGRSKSKGTSYAFFTPSNS 552
R GR + F+ +S
Sbjct: 1511 RAGRDGKYAIAALFYEKYDS 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -2
Query: 785 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 611 RTGRSKSKGTSYAFFTPSNS 552
R GR + F+ +S
Sbjct: 1511 RAGRDGKYAIAALFYEKYDS 1530
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = -2
Query: 788 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 609
H + ER + +++ G I+VAT G+D +++VI+ +P S E Y GR
Sbjct: 774 HAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGR 833
Query: 608 TGRSKSKGTSYAFFT 564
GR F++
Sbjct: 834 AGRDGKPAHCIMFYS 848
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = -2
Query: 776 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 597
T + + + L++FK G+ ++L+AT VA G+DV VI F+ + Y+ GR
Sbjct: 408 TFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAM 467
Query: 596 KSK 588
SK
Sbjct: 468 ASK 470
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 776 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 600
T QER ++ + G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 595 TVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 647 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 495
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 734 GRASILVATDVAARGLDVDGIKYVINFDY 648
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 734 GRASILVATDVAARGLDVDGIKYVIN 657
G +++AT++A L +DGI YV++
Sbjct: 777 GGRKVVIATNIAETSLTIDGIYYVVD 802
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 362 PFGYSCQNCFRV*KSRHHLGHLHR-IC-SCSTRRHHHRNGRP 481
PFG SC NC + S G + +C +C + H ++ RP
Sbjct: 7 PFGQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARP 48
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 776 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 657
T +++ +V EG +VAT+VA + + I+YV++
Sbjct: 712 TTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 592 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 476
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -2
Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 657
+H T E+ V + ++ +T++A + +DGI YV++
Sbjct: 275 LHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVD 319
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 722 ILVATDVAARGLDVDGIKYVIN 657
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 722 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 561
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 680 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 546
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 686 DVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS---KGTSYAFFTPSNSRQAKDLVSVLQE 516
++D I+ + F+ N +D I G+ K KG + A PSN+ ++ + +
Sbjct: 203 ELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLLANR 262
Query: 515 ANQIISPQLQSMAD 474
I+SPQ + D
Sbjct: 263 RISIVSPQSGTTRD 276
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 630 LHPSY-WENWTFKIKRNIICFLYPFKFP 550
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 689 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 579
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,868
Number of Sequences: 5004
Number of extensions: 58862
Number of successful extensions: 190
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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