Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a08
         (804 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...   113   8e-27
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    27   0.51 
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   8.3  
AJ276428-1|CAB81934.1| 1322|Anopheles gambiae adhesive serine pr...    23   8.3  
AF117751-1|AAD38337.3| 1322|Anopheles gambiae serine protease 22...    23   8.3  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score =  113 bits (271), Expect = 8e-27
 Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
 Frame = -2

Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
           +HGD+ Q+ER+  LY FK GR  +L+AT VAARGLD+  + +V+N+D P S +DY+HRIG
Sbjct: 453 IHGDRLQREREMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIG 512

Query: 611 RTGRSKSKGTSYAFFTPSNSR-QAKDLVSVLQEANQII 501
           RTGR  +KG + +F+ P   R  A DLV +L +A Q +
Sbjct: 513 RTGRVGNKGRATSFYDPEADRAMASDLVKILTQAGQSV 550


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 410 HHLGHLHRICSCSTRRHHHRN 472
           HHL H H   + +T  HHH++
Sbjct: 707 HHLSHHHGGAAAATGHHHHQH 727



 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 362 PFGYSCQNCFRV*KSRHHLGHLHR 433
           P  YSC +C +   +R H  ++HR
Sbjct: 896 PTLYSCVSCHKTVSNRWHHANIHR 919


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 624 PSYWENWTFKIKRNI 580
           PS W  W+  +KR +
Sbjct: 219 PSLWNKWSLSVKRRL 233


>AJ276428-1|CAB81934.1| 1322|Anopheles gambiae adhesive serine
           protease protein.
          Length = 1322

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 404 SRHHLGHLHRICSCSTRRHHHRNGRPS 484
           SRHH+  +  +    ++ HHHR   P+
Sbjct: 40  SRHHVHMMPEMHGAYSQVHHHRAQDPT 66


>AF117751-1|AAD38337.3| 1322|Anopheles gambiae serine protease 22D
           protein.
          Length = 1322

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 404 SRHHLGHLHRICSCSTRRHHHRNGRPS 484
           SRHH+  +  +    ++ HHHR   P+
Sbjct: 40  SRHHVHMMPEMHGAYSQVHHHRAQDPT 66


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,102
Number of Sequences: 2352
Number of extensions: 14679
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)