Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a08
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      109   3e-26
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.62 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.62 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  109 bits (262), Expect = 3e-26
 Identities = 49/98 (50%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
 Frame = -2

Query: 791 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 612
           +HGD+ Q++R+E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++Y+HRIG
Sbjct: 481 IHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIG 540

Query: 611 RTGRSKSKGTSYAFFTPSNSRQAK-DLVSVLQEANQII 501
           RTGR  ++G + +FF P      + DLV +L++ANQ +
Sbjct: 541 RTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 593 ILNVQFSQYDGCNPPTNLDNQNLLHI 670
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 593 ILNVQFSQYDGCNPPTNLDNQNLLHI 670
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 278 ILRGFTLLEMPTKILFNSRQIVCNHCR 358
           IL+G   +E P  I  N+  ++   CR
Sbjct: 577 ILKGIDAIEFPRSITRNATALIKKLCR 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,451
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)