Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a06
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical p... 29 0.98
Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H... 29 1.3
AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical... 28 1.7
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 28 2.3
U41746-1|AAA83330.3| 347|Caenorhabditis elegans Seven tm recept... 27 3.0
Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z69384-3|CAA93418.1| 475|Caenorhabditis elegans Hypothetical pr... 26 9.1
>Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical
protein Y57G11C.37 protein.
Length = 837
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 257 QTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVF 102
+++ +++A R F E I F LLF L C LIN LI ++ F
Sbjct: 613 ESVMSVYA-RPLDDFLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663
>Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 254 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 93
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 83 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139
Query: 92 LL 87
LL
Sbjct: 140 LL 141
>Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 254 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 93
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 83 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139
Query: 92 LL 87
LL
Sbjct: 140 LL 141
>AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H
exchanger isoform 1 protein.
Length = 479
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 254 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 93
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 82 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 138
Query: 92 LL 87
LL
Sbjct: 139 LL 140
>AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical
protein Y47D3B.3 protein.
Length = 446
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 107 VFGKSLLLSKFVNFCIANSDGVTIQHKMLTKRV 9
+FG++ L+SK++ CI+ D I K+ T+ V
Sbjct: 15 IFGQNFLISKYLRTCISLLDPQLIDLKLQTRMV 47
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 284 LHYSNAHAKQTLATLFA-NRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 129
LH+ NA+ + + TL A NR S F+ + + ++LF +L ++ + T
Sbjct: 98 LHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWSILFPLSLGAVILVEVFFT 150
>U41746-1|AAA83330.3| 347|Caenorhabditis elegans Seven tm receptor
protein 177 protein.
Length = 347
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 116 EINVFGKSLLLSKFVNFCIANSDGVTIQHKMLTKRVK 6
++ VF L ++FV CIAN + + + +LTK K
Sbjct: 2 DLTVFNSFLKTAQFVGTCIANPLNIFLIYLILTKSSK 38
>Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical
protein M01B2.6 protein.
Length = 450
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = -1
Query: 281 HYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 129
+YS + + H+ F +TF TL+F+N M N+ T
Sbjct: 98 YYSGTSDSEITINQVSKLTHAIFAFVQLTFDGTLVFRNKNRFMALRNIAKT 148
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 26.2 bits (55), Expect = 6.9
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = -1
Query: 302 DDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLI 123
D+ + +N H KQ + N SS Y F++ ++ N++L ++ + I
Sbjct: 85 DEINVDVELTNEHKKQAKSNPLGNLGDSSSYG----FMNKII--ENMSLYIS----SVEI 134
Query: 122 NFEINVFGKSLLLSK 78
NF+ +VFG S +L +
Sbjct: 135 NFDSDVFGGSFMLQR 149
>Z69384-3|CAA93418.1| 475|Caenorhabditis elegans Hypothetical
protein T11G6.3 protein.
Length = 475
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 275 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 174
+NA LATL A+ + Y+Y +ST LF
Sbjct: 178 TNASVGNILATLIASWTVNIGYQYPFLIISTALF 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,939,787
Number of Sequences: 27780
Number of extensions: 119174
Number of successful extensions: 320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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