Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a05
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693 56 3e-08
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 40 0.002
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 36 0.039
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 33 0.27
04_01_0308 + 4188726-4190351 33 0.36
04_01_0290 + 3843610-3843712,3844088-3846003 33 0.36
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175... 30 1.9
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 30 2.5
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 29 3.4
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 29 4.4
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 29 4.4
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 29 4.4
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 29 5.9
02_03_0137 + 15624078-15624101,15624259-15624312,15624900-156249... 29 5.9
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 28 7.8
>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
Length = 126
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/91 (32%), Positives = 54/91 (59%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKA 639
++ + DE+K+ + +NL++A EL L+D+ + + + IGE+F + LE+ K
Sbjct: 28 RLHELHDEIKLAKEANENLDDAGNELILSDE-DVVRFQIGEVFAHMPRDDVETRLEQMKE 86
Query: 638 KKIHEIHDLEEKCEELKSQMSDLKAHLYGKF 546
++ LE++ E + SQM++LK LYGKF
Sbjct: 87 DAAKKLERLEQEKESIVSQMAELKKILYGKF 117
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = -3
Query: 800 DELKVKQNDVKNLEEAVEELSLA--DDSEKIPYLIGE----IFICQNLEITLKNLEEAKA 639
++L+ + + NL+EAVE L A D ++ E + Q LE LKNLE
Sbjct: 796 NKLEEQNQQISNLQEAVENLEAAKTDMYNELTVCQEEKNAALLQVQQLEANLKNLESELE 855
Query: 638 KKIHEIHDLEEKCEELKSQMSDLKAHL 558
+K ++ LE+ EEL+ ++S L+ L
Sbjct: 856 QKQSQVSALEQANEELREKISSLERQL 882
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -3
Query: 680 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 549
NL+ ++NLE AK +E+ +EKC L SQ+ KA L K
Sbjct: 548 NLQEAVENLEAAKTNMYNEVTVHQEKCTFLSSQLE--KAQLAEK 589
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -3
Query: 797 ELKVKQNDVKNLEEAVEELS--LADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHE 624
EL+ Q+ VK LE +L+ +A ++ L E+ Q LE + KNL +K +
Sbjct: 699 ELEKAQSSVKELESTNGDLNDKIAVLQKEGSSLASEL---QQLEASFKNLGNDLEQKFEQ 755
Query: 623 IHDLEEKCEELKSQMSDLKAHL 558
I +++ EEL+ S+L+ L
Sbjct: 756 ISVMQKNNEELELANSNLQNEL 777
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 35.9 bits (79), Expect = 0.039
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Frame = -3
Query: 797 ELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKN-LEEAKAK--KIH 627
ELK+K ND + ++ +EE+S + + +I Q+ + LK+ L+EAK + K+
Sbjct: 1091 ELKLKANDYEK-QQMIEEIS------GLKLQVQKIMSLQDEVLKLKSSLDEAKFERGKLE 1143
Query: 626 EIH-DLEEKCEELKSQMSDL 570
E+H + E+CEELK+Q + L
Sbjct: 1144 ELHRSVTEECEELKAQKAML 1163
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 680 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 570
NL I LKN +EA + + + +LEE EE K+++S +
Sbjct: 412 NLSIQLKNTQEANIELVSILQELEETIEEQKAEISKI 448
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 33.1 bits (72), Expect = 0.27
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -3
Query: 797 ELKVKQNDVKNLEEAVEELS-LADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEI 621
ELK K +D + ++ +EE+S L KI L E+ Q+ +L + K K I
Sbjct: 1146 ELKSKSSDYEK-QQIIEEISVLKIQVHKIAGLQDEVLTLQS---SLDEAKFEKGKLEGLI 1201
Query: 620 HDLEEKCEELKSQ 582
L E+CEELK+Q
Sbjct: 1202 QSLSEECEELKAQ 1214
>04_01_0308 + 4188726-4190351
Length = 541
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -3
Query: 803 KDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIF-ICQNLEITLKNLEEAKAKKIH 627
K +L ++ND LE E + K L E+ + + E T K + KAK +
Sbjct: 340 KKDLVERENDKFQLEVLTGEQKQSKSKAKAKSLKVELSALVEAKEATAKAFDVEKAKIMK 399
Query: 626 EIHDLEEKCEELKSQ 582
E+ DL++K EE++ +
Sbjct: 400 ELEDLKKKVEEIQGK 414
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 32.7 bits (71), Expect = 0.36
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -3
Query: 782 QNDVKNLEEAVEELSLADDSEKIPYLIGEIF-ICQNLEITLKNLEEAKAKKIHEIHDLEE 606
+ND LE E + + ++ L E+ + + E+ K ++ KAK + E DL+
Sbjct: 101 ENDKLRLEVLTAEEKYSQSAAEVEKLQKELVALAEVKEVAAKAFDDEKAKMMMESVDLKS 160
Query: 605 KCEELKSQMSDLKA 564
+ EE++ M +K+
Sbjct: 161 RLEEIQGNMDMIKS 174
>02_01_0265 -
1754861-1755063,1755186-1755360,1755558-1755653,
1756110-1756256,1756343-1756511,1756661-1756812,
1756898-1756968,1757064-1757247,1757332-1757523,
1757664-1757771
Length = 498
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = -3
Query: 818 KVDDYKDELKVK-QNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAK 642
+++ K+EL+ ++ ++ +E + + DS+ +P L E Q L+ + ++L+E
Sbjct: 100 EIETRKEELETNLSTNLMRRQKELEAIISSADSKTLP-LEAESKE-QELKSSKRSLDELT 157
Query: 641 AK---KIHEIHDLEEKCEELKSQMSDLKA 564
A + I++ K EELK Q DLKA
Sbjct: 158 AMLKANVDAINNFTRKMEELKRQRDDLKA 186
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -3
Query: 722 EKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 558
+KI ++ I+ + + +KN+ E + +++ + L+E+ L +QMS LK L
Sbjct: 803 KKINEIVDRIYKDFSKSVGVKNIREYEERQLKDAQALQERKLSLSNQMSKLKYQL 857
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 29.5 bits (63), Expect = 3.4
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Frame = -3
Query: 797 ELKVKQNDVKNLEEAVEELSLA--DDSEKIPYLI-------GEIFICQNLEITLKN-LEE 648
E++V + D + L+E V +L LA D +EK+ ++ E QN LK LE
Sbjct: 244 EVQVSRLD-EALKECVRQLHLAQEDQAEKVHDVVTKSQELESENSKLQNRITELKKQLET 302
Query: 647 AK--AKKIHEIHDLEEKCEELKSQMSDLKAHL 558
K A + HDL+EK + +K + DLK+ L
Sbjct: 303 TKLEASNMSIDHDLQEKFQAIKKENMDLKSKL 334
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 659 NLEEAKAKKIHEIHDLEEKCEELKSQMSDLK 567
N E +A+ + +IHDL+E E +SQM L+
Sbjct: 173 NSEAERAQHLKQIHDLQEHLREKESQMLALE 203
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = -3
Query: 803 KDELKVKQNDVKNL--EEAVEELSLADDSEKIPYLIG-EIFICQNLEITLKNLEEAKAKK 633
+++ K+ + DV L E+ + E ++A +++ + Q +E+T K +EE K
Sbjct: 286 EEKRKLGEQDVARLMKEKEISENTIASLKKEMEVMTSMHEQQLQKIELTAKQMEEHLTTK 345
Query: 632 IHEIHDL----EEKCEELKSQMSDLKAHLYGK 549
I E+ L +K EE+++ S LK+ L+ K
Sbjct: 346 IKEVESLLVQSNKKIEEVEA-ASLLKSQLWNK 376
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -3
Query: 782 QNDVKNLEEAVEELSLADDSEKIPYLIGEI-FICQNLEITLKNLEEAKAKKIHEIHDLEE 606
+ND LE E L D+ +I L E+ + + E+ K ++ KAK + E DL+
Sbjct: 87 ENDKLRLEVLTAEDKL--DAVEIEKLQKELDALAEVKEVAAKAFDDEKAKMMMESVDLKS 144
Query: 605 KCEELKSQMSDLKA 564
+ EE++ M +++
Sbjct: 145 RIEEIQGNMDMIES 158
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = -3
Query: 815 VDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEE 648
V +D+ +V+Q ++ + E V E S S K P++ EIF C+ ++I L+ L E
Sbjct: 1309 VPSLRDKAQVEQL-LRYIVEEVPEDSEKKRSFKFPFIACEIFTCE-IDIILRTLVE 1362
>02_03_0137 +
15624078-15624101,15624259-15624312,15624900-15624954,
15625192-15625296,15625682-15625722,15626057-15626162,
15627010-15627016,15627134-15627218,15627315-15627428
Length = 196
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/80 (18%), Positives = 38/80 (47%)
Frame = -3
Query: 797 ELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIH 618
+++ K+ + K +EEL D+ +G++FI + + L E+ I
Sbjct: 97 QMRSKEGEKKRAYLTLEELRQLPDNTNTYKTVGKVFILEPKSLLLNEQEQKLNDSESAIA 156
Query: 617 DLEEKCEELKSQMSDLKAHL 558
++ E L+ Q+++++ ++
Sbjct: 157 SMQTSKEYLEKQLAEVENNI 176
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 674 EITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAH 561
E+ K LEE + K I E+H+ ++L++Q+ + H
Sbjct: 873 EMEAKQLEERRDKFIQELHEENLLLDDLQAQLMKISEH 910
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,653
Number of Sequences: 37544
Number of extensions: 249517
Number of successful extensions: 635
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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