Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a05
         (820 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450 CY...    29   0.17 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.69 
AF020870-1|AAC31873.1|  692|Anopheles gambiae hexamerin A protein.     25   2.1  

>AF487534-1|AAL93295.1|  509|Anopheles gambiae cytochrome P450
           CYP6P3 protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 809 DYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQN 678
           DY++   VK+ND  NL   ++     DDS+      GE+ + QN
Sbjct: 259 DYREANNVKRNDFMNLMLQIKNKGKLDDSDDGSLGKGEVGMTQN 302


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKA 639
           K++   + L+  ++ +K LEE  EELS     +K    +  +     L+ T K LEE   
Sbjct: 185 KLEKISEYLRTIEDRLKTLEEEKEELSEYQKWDKARRTLEYVIYETELKETRKQLEELDG 244

Query: 638 KK 633
           ++
Sbjct: 245 QR 246


>AF020870-1|AAC31873.1|  692|Anopheles gambiae hexamerin A protein.
          Length = 692

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 714 PLPYW*NFYLSEFGNYFEKS*G 649
           P+ Y+ NFY  E+ NY+ +  G
Sbjct: 209 PMDYYNNFYTEEYLNYYTEDIG 230


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,550
Number of Sequences: 2352
Number of extensions: 13206
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86902827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)