Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a05
(820 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-5|CAA97410.1| 126|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF292051-1|AAG41147.1| 126|Caenorhabditis elegans 4M79 protein. 44 1e-04
U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical pr... 40 0.003
U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical pr... 40 0.003
AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical ... 33 0.19
Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical pr... 33 0.25
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 33 0.32
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 31 0.99
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 31 1.3
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 30 2.3
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 4.0
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 29 4.0
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 9.2
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 28 9.2
U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical pr... 28 9.2
U58746-11|AAB00630.1| 314|Caenorhabditis elegans Hypothetical p... 28 9.2
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 9.2
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 28 9.2
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z73102-5|CAA97410.1| 126|Caenorhabditis elegans Hypothetical
protein B0035.4 protein.
Length = 126
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = -3
Query: 803 KDELKVKQNDVKNLEEAVEELSLADD--SEKIPYLIGEIFICQNLEITLKNLEEAKAKKI 630
K ++K + + N+ EA +E+ L DD S IP IG F+ N + ++LE K
Sbjct: 29 KADVKEAKTLIDNINEASDEILLLDDEDSASIPCRIGSCFVHFNGDSLNEHLEGKKTTAE 88
Query: 629 HEIHDLEEKCEELKSQMSDLKAHLYGKFGSHI 534
+ + + + + + M +K LY KFG I
Sbjct: 89 KVLSEKTSELDAISADMEQIKKVLYAKFGDQI 120
>AF292051-1|AAG41147.1| 126|Caenorhabditis elegans 4M79 protein.
Length = 126
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = -3
Query: 803 KDELKVKQNDVKNLEEAVEELSLADD--SEKIPYLIGEIFICQNLEITLKNLEEAKAKKI 630
K ++K + + N+ EA +E+ L DD S IP IG F+ N + ++LE K
Sbjct: 29 KADVKEAKTLIDNINEASDEILLLDDEDSASIPCRIGSCFVHFNGDSLNEHLEGKKTTAE 88
Query: 629 HEIHDLEEKCEELKSQMSDLKAHLYGKFGSHI 534
+ + + + + + M +K LY KFG I
Sbjct: 89 KVLSEKTSELDAISADMEQIKKVLYAKFGDQI 120
>U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical
protein F46H5.7b protein.
Length = 575
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEI--FICQNLEITLKNLEEA 645
+V +YK +L Q VKNLE+ +E AD EK + EI Q+ + + NL
Sbjct: 186 RVKEYKSDLSAAQLKVKNLEKKLESAQSADSEEKFVRIDSEIDEKRSQDHDEEINNLHNV 245
Query: 644 KAKKIHEIHDLEEKCEELKSQMSDLKAHL 558
+ +++ +E K ++L+++ S+ + +L
Sbjct: 246 IEELRNKLATVESKNKDLETKFSENQDYL 274
>U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical
protein F46H5.7a protein.
Length = 572
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEI--FICQNLEITLKNLEEA 645
+V +YK +L Q VKNLE+ +E AD EK + EI Q+ + + NL
Sbjct: 186 RVKEYKSDLSAAQLKVKNLEKKLESAQSADSEEKFVRIDSEIDEKRSQDHDEEINNLHNV 245
Query: 644 KAKKIHEIHDLEEKCEELKSQMSDLKAHL 558
+ +++ +E K ++L+++ S+ + +L
Sbjct: 246 IEELRNKLATVESKNKDLETKFSENQDYL 274
>AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical
protein Y116A8C.18 protein.
Length = 358
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = -3
Query: 779 NDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKC 600
N++K EE ++ L KI L E ++L T+K+LE K ++ H+ + ++
Sbjct: 69 NELKLSEELIDCLEKQLQESKIE-LKEEKLSKKHLLTTMKSLETEKMEQEHKTKIMNKEV 127
Query: 599 EELKSQMSDLKAHLYGK 549
EELK ++ +L+A Y +
Sbjct: 128 EELKIRVKELEATDYSE 144
>Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical
protein T05B9.1 protein.
Length = 262
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = -3
Query: 674 EITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 558
E+T L +AK++K LEE EELKSQ DLKA L
Sbjct: 44 ELTQDKLNDAKSRK-----KLEESMEELKSQNLDLKAQL 77
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = -3
Query: 800 DELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQ---NLEITLKNLEEAKAKKI 630
DE + + V++LEE +E+ ++ + L+ + + Q NLE L L++A K +
Sbjct: 942 DERRKQMETVRDLEEQLEQ----EEQARQKLLLDKTNVDQRLRNLEERLVELQDAYDKLL 997
Query: 629 HEIHDLEEKCEELKSQMSD 573
E LEEK E L +Q+ D
Sbjct: 998 KEKRLLEEKVEGLTTQLLD 1016
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 31.1 bits (67), Expect = 0.99
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = -3
Query: 815 VDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAK 636
+DD DELK + D ++ + EL + + +P + ++ + +E L L +A+
Sbjct: 2161 IDDKIDELKNPEEDTSAADQLISELHVISE---MPAVTIDLSMLNAIEEGLSTLPAHQAE 2217
Query: 635 ----KIHEIHDLEEKCEELKSQMSDLKA 564
KI E+ +E ++ + +SDL A
Sbjct: 2218 NVQAKIDELRQKKEVADQTEQILSDLNA 2245
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKA 639
++D+ K +L K ++V L +E LS + + Y + + LEI L +E
Sbjct: 994 QIDELKKQLNQKISEVNKLSSKIEALSQLNRT----YNEENRNLSRQLEILLTQNKELLQ 1049
Query: 638 KKIHEIHDLEEKCEELKSQMSDLKAH 561
+ +H+ + ++ + Q+S L+ H
Sbjct: 1050 RALHDKDQYHLEMKDFQDQLSALRRH 1075
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKA 639
++ DY+DE V + +++ L+E S EKI G +C L ++ E+ KA
Sbjct: 80 QIQDYRDENTVLKCELRELQETTFATSDEKLREKIRTTEG---LCDEL---MEENEQLKA 133
Query: 638 KKIHEIHDLEEKCEELKSQ 582
E+ DL+++ EE++ Q
Sbjct: 134 ----EVKDLQQEIEEMQDQ 148
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKA 639
++ DY+DE V + +++ L+E S EKI G +C L ++ E+ KA
Sbjct: 80 QIQDYRDENTVLKCELRELQETTFATSDEKLREKIRTTEG---LCDEL---MEENEQLKA 133
Query: 638 KKIHEIHDLEEKCEELKSQ 582
E+ DL+++ EE++ Q
Sbjct: 134 ----EVKDLQQEIEEMQDQ 148
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKA 639
++ DY+DE V + +++ L+E S EKI G +C L ++ E+ KA
Sbjct: 80 QIQDYRDENTVLKCELRELQETTFATSDEKLREKIRTTEG---LCDEL---MEENEQLKA 133
Query: 638 KKIHEIHDLEEKCEELKSQ 582
E+ DL+++ EE++ Q
Sbjct: 134 ----EVKDLQQEIEEMQDQ 148
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 686 CQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 570
CQ+++++L+ +E K K H+I L+++ + +S L
Sbjct: 970 CQDVDLSLRKVEAEKNAKEHQIRALQDEMRQQDENISKL 1008
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 686 CQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 570
CQ+++++L+ +E K K H+I L+++ + +S L
Sbjct: 970 CQDVDLSLRKVEAEKNAKEHQIRALQDEMRQQDENISKL 1008
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 686 CQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 570
CQ+++++L+ +E K K H+I L+++ + +S L
Sbjct: 970 CQDVDLSLRKVEAEKNAKEHQIRALQDEMRQQDENISKL 1008
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 662 KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 558
K LEE+ AK + E L E K+Q+SD + L
Sbjct: 880 KELEESSAKLVEEKTSLFTNLESTKTQLSDAEERL 914
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 662 KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 558
K LEE+ AK + E L E K+Q+SD + L
Sbjct: 880 KELEESSAKLVEEKTSLFTNLESTKTQLSDAEERL 914
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = -3
Query: 803 KDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHE 624
++E + KQ + + +A EEL + ++ ++ L E + LEI K EE K K + E
Sbjct: 549 EEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEEEKKKKALEE 608
Query: 623 IHDLEEKCEELKSQMSDLK 567
+ + K E K++ K
Sbjct: 609 --EKKRKIAEEKARQKQEK 625
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = -3
Query: 818 KVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKA 639
++DD K ELK+K+ +++ EA S + + GEI ++ + L+ EA
Sbjct: 1497 ELDDLKKELKLKEIELQKASEASTTASSEWNDDGWNDDDGEIDRMKDTQKVLEMKVEALQ 1556
Query: 638 KKIHEIHD----LEEKCEELKSQMSDLKAHL 558
++ + D L E L+S++ D+++ L
Sbjct: 1557 DELQRLKDNEIELTETISALQSKLYDVQSEL 1587
>U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical
protein C52B9.4 protein.
Length = 558
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 370 IFELRNINSYCVEKTMFRITIIILCEAY 453
I E+ I S C +KTM R+ +II+C Y
Sbjct: 282 ILEVAEIVS-CAKKTMSRVLVIIVCVGY 308
>U58746-11|AAB00630.1| 314|Caenorhabditis elegans Hypothetical
protein R05G6.1 protein.
Length = 314
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 800 DELKVKQNDVKNLEEAVEELSLADDSEKIP 711
DE++VK NDV L+ A+E L + ++ P
Sbjct: 112 DEVRVKMNDVAQLQGAIEHYVLRNSAQFDP 141
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 662 KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 558
K LEE+ AK + E L E K+Q+SD + L
Sbjct: 883 KELEESSAKLVEEKTSLFTNLESTKTQLSDAEERL 917
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -3
Query: 752 VEELSLADDSEKIPYLIGEIFICQNLEITLKNLE--EAKAKKIHEIHDLEEKCE---ELK 588
VE+ +DS P+ G IF C N E + ++H++ L+ +C+ +
Sbjct: 8 VEQKQQLEDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHDLSRLKHRCKLCGKAY 67
Query: 587 SQMSDLKAHL 558
+ +L AH+
Sbjct: 68 KRKKNLDAHM 77
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -3
Query: 752 VEELSLADDSEKIPYLIGEIFICQNLEITLKNLE--EAKAKKIHEIHDLEEKCE---ELK 588
VE+ +DS P+ G IF C N E + ++H++ L+ +C+ +
Sbjct: 126 VEQKQQLEDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHDLSRLKHRCKLCGKAY 185
Query: 587 SQMSDLKAHL 558
+ +L AH+
Sbjct: 186 KRKKNLDAHM 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,937
Number of Sequences: 27780
Number of extensions: 295991
Number of successful extensions: 918
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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