Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a05
(820 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 24 1.9
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 24 1.9
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 24 1.9
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 24 1.9
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 24 1.9
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 24 1.9
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 24 1.9
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 23 4.5
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 23 4.5
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 23 4.5
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 23 4.5
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 23 4.5
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 23 4.5
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 23 4.5
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 5.9
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 7.8
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 22 PKTFSHLQHNYISTRLAMYHYSSNN 96
PK S L +N I Y+Y++NN
Sbjct: 78 PKIISSLSNNTIHNNNYKYNYNNNN 102
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 22 PKTFSHLQHNYISTRLAMYHYSSNN 96
PK S L +N I Y+Y++NN
Sbjct: 78 PKIISSLSNNTIHNNNYKYNYNNNN 102
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 22 PKTFSHLQHNYISTRLAMYHYSSNN 96
PK S L +N I Y+Y++NN
Sbjct: 79 PKIISSLSNNTIHNNNYKYNYNNNN 103
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 22 PKTFSHLQHNYISTRLAMYHYSSNN 96
PK S L +N I Y+Y++NN
Sbjct: 79 PKIISSLSNNTIHNNNYKYNYNNNN 103
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 22 PKTFSHLQHNYISTRLAMYHYSSNN 96
PK S L +N I Y+Y++NN
Sbjct: 79 PKIISSLSNNTIHNNNYKYNYNNNN 103
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 22 PKTFSHLQHNYISTRLAMYHYSSNN 96
PK S L +N I Y+Y++NN
Sbjct: 79 PKIISSLSNNTIHNNNYKYNYNNNN 103
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 23.8 bits (49), Expect = 1.9
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -3
Query: 782 QNDVKNLEEAVEELSLADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEK 603
QND+ + E VE+ + I LI I N+++TL+N E KKI +I+ L
Sbjct: 68 QNDILKVIEWVEK-----NLGAIDILINNATI--NIDVTLQNDEVLDWKKIFDINLLGLT 120
Query: 602 C 600
C
Sbjct: 121 C 121
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 227 IT*VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
I+ + N Y YS + NNN + +K ++ +N
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 227 IT*VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
I+ + N Y YS + NNN + +K ++ +N
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 227 IT*VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
I+ + N Y YS + NNN + +K ++ +N
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 227 IT*VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
I+ + N Y YS + NNN + +K ++ +N
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 227 IT*VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
I+ + N Y YS + NNN + +K ++ +N
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 227 IT*VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
I+ + N Y YS + NNN + +K ++ +N
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.6 bits (46), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 227 IT*VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
I+ + N Y YS + NNN + +K ++ +N
Sbjct: 82 ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 236 VKNQYTYSTNLDNNNNIFCSIFKDHFFELN 325
+ N Y YS + NNN + +K ++ +N
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.8 bits (44), Expect = 7.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 737 LADDSEKIPYLIGEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKC 600
++ D+ YL+ +F + NLE + ++ E DLEE C
Sbjct: 227 MSQDNHSKEYLVSIMFSHYDRNNN-GNLEREELEQFAENEDLEELC 271
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,604
Number of Sequences: 438
Number of extensions: 3789
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -