Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a04
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         36   0.038
10_01_0274 - 2901033-2901778,2902475-2902634                           32   0.47 
06_01_0553 + 3942907-3943617                                           29   4.4  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    29   4.4  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 88  HTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 201
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 125 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKWEVKHRKCPP 802
           P ST   G+ AP+CPP   ++      CPP
Sbjct: 237 PPSTPAYGTPAPECPPSTPEYGTPATACPP 266



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKWEVKHRKCPPRP 808
           P++    G  AP+CPP    +     +CPP P
Sbjct: 192 PSTPPGYGQPAPECPPADPGYGQPAPECPPPP 223


>06_01_0553 + 3942907-3943617
          Length = 236

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 743 APKCPPQPQKWEVKHRKCPPRP 808
           AP+ PP PQ W+    + PP P
Sbjct: 116 APRPPPPPQLWKPPRARAPPPP 137


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 673 PPQPQKWEIKHRRAHLNLKNGK 738
           PP PQ +++  R+ H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 714 PPQPQKWEVKHRSAHLNLKNGK 779
           PP PQ ++V  R  H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,054,872
Number of Sequences: 37544
Number of extensions: 511950
Number of successful extensions: 1562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)