Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a04
(808 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript varia... 33 1.6
DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript varia... 33 1.6
BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438... 33 1.6
BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript varia... 33 1.6
AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438... 33 1.6
AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438... 33 1.6
AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438... 33 1.6
AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens ... 33 1.6
AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein. 33 1.6
AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein pr... 33 1.6
AL645612-1|CAH70666.1| 557|Homo sapiens family with sequence si... 32 2.8
AL157893-1|CAH72466.1| 655|Homo sapiens family with sequence si... 32 2.8
AB095940-1|BAC23116.1| 572|Homo sapiens KIAA2020 protein protein. 32 2.8
AY834276-1|AAV97884.1| 1042|Homo sapiens mitogen-activated prote... 31 4.9
AY212247-1|AAO32626.1| 1239|Homo sapiens Ste20 group protein kin... 31 4.9
AF096300-1|AAD16137.1| 1165|Homo sapiens HPK/GCK-like kinase HGK... 31 4.9
AC005035-1|AAY14969.1| 1260|Homo sapiens unknown protein. 31 4.9
AB014587-1|BAA31662.1| 1175|Homo sapiens KIAA0687 protein protein. 31 4.9
AB013385-1|BAA33714.1| 543|Homo sapiens NIK protein. 31 4.9
>DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 818
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript variant
2 protein.
Length = 818
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438
protein.
Length = 818
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438
protein.
Length = 392
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303
>AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens
cDNA FLJ16387 fis, clone TRACH2007483, weakly similar
to GASTRULA ZINC FINGER PROTEIN XLCGF7.1. ).
Length = 779
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 655 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 690
>AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303
>AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein
protein.
Length = 828
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 498
H +RG+ + H EE SH CP+L+ HLH + E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AL645612-1|CAH70666.1| 557|Homo sapiens family with sequence
similarity 22, member D protein.
Length = 557
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 725 SKMGSKAPKC---PPQPQKWEVKHRKCPPRP 808
SK G KAP PP+PQ+ K R+ PPRP
Sbjct: 383 SKAGPKAPTACLPPPRPQRPVTKARRPPPRP 413
>AL157893-1|CAH72466.1| 655|Homo sapiens family with sequence
similarity 22, member A protein.
Length = 655
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 725 SKMGSKAPKC---PPQPQKWEVKHRKCPPRP 808
SK G KAP PP+PQ+ K R+ PPRP
Sbjct: 232 SKAGPKAPTACLPPPRPQRPVTKARRPPPRP 262
>AB095940-1|BAC23116.1| 572|Homo sapiens KIAA2020 protein protein.
Length = 572
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 725 SKMGSKAPKC---PPQPQKWEVKHRKCPPRP 808
SK G KAP PP+PQ+ K R+ PPRP
Sbjct: 398 SKAGPKAPTACLPPPRPQRPVTKARRPPPRP 428
>AY834276-1|AAV97884.1| 1042|Homo sapiens mitogen-activated protein
kinase kinase kinase kinase 4 isoform protein.
Length = 1042
Score = 31.1 bits (67), Expect = 4.9
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 LRDEAV-EDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFASFLCVA-FVCAVLVETCL 63
+R EA+ +D + G+ V NP N RP++ I+ + + LC A + +LV T
Sbjct: 689 MRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTES 748
Query: 62 GLVL 51
GL+L
Sbjct: 749 GLML 752
>AY212247-1|AAO32626.1| 1239|Homo sapiens Ste20 group protein kinase
HGK protein.
Length = 1239
Score = 31.1 bits (67), Expect = 4.9
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 LRDEAV-EDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFASFLCVA-FVCAVLVETCL 63
+R EA+ +D + G+ V NP N RP++ I+ + + LC A + +LV T
Sbjct: 886 MRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTES 945
Query: 62 GLVL 51
GL+L
Sbjct: 946 GLML 949
>AF096300-1|AAD16137.1| 1165|Homo sapiens HPK/GCK-like kinase HGK
protein.
Length = 1165
Score = 31.1 bits (67), Expect = 4.9
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 LRDEAV-EDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFASFLCVA-FVCAVLVETCL 63
+R EA+ +D + G+ V NP N RP++ I+ + + LC A + +LV T
Sbjct: 804 MRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTES 863
Query: 62 GLVL 51
GL+L
Sbjct: 864 GLML 867
>AC005035-1|AAY14969.1| 1260|Homo sapiens unknown protein.
Length = 1260
Score = 31.1 bits (67), Expect = 4.9
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 LRDEAV-EDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFASFLCVA-FVCAVLVETCL 63
+R EA+ +D + G+ V NP N RP++ I+ + + LC A + +LV T
Sbjct: 907 MRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTES 966
Query: 62 GLVL 51
GL+L
Sbjct: 967 GLML 970
>AB014587-1|BAA31662.1| 1175|Homo sapiens KIAA0687 protein protein.
Length = 1175
Score = 31.1 bits (67), Expect = 4.9
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 LRDEAV-EDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFASFLCVA-FVCAVLVETCL 63
+R EA+ +D + G+ V NP N RP++ I+ + + LC A + +LV T
Sbjct: 822 MRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTES 881
Query: 62 GLVL 51
GL+L
Sbjct: 882 GLML 885
>AB013385-1|BAA33714.1| 543|Homo sapiens NIK protein.
Length = 543
Score = 31.1 bits (67), Expect = 4.9
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 236 LRDEAV-EDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFASFLCVA-FVCAVLVETCL 63
+R EA+ +D + G+ V NP N RP++ I+ + + LC A + +LV T
Sbjct: 190 MRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTES 249
Query: 62 GLVL 51
GL+L
Sbjct: 250 GLML 253
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,789,131
Number of Sequences: 237096
Number of extensions: 2812164
Number of successful extensions: 6787
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6764
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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