Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13a04
(808 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT015960-1|AAV36845.1| 110|Drosophila melanogaster RH46982p pro... 31 2.5
AE014296-2592|AAN11770.1| 110|Drosophila melanogaster CG32151-P... 31 2.5
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro... 30 3.2
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio... 30 3.2
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein. 30 3.2
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA... 30 3.2
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD... 30 3.2
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB... 30 3.2
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC... 30 3.2
AY070912-1|AAL48534.1| 201|Drosophila melanogaster RE02355p pro... 30 4.3
AE013599-730|AAF59031.1| 201|Drosophila melanogaster CG13746-PA... 30 4.3
AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p pro... 29 9.9
>BT015960-1|AAV36845.1| 110|Drosophila melanogaster RH46982p
protein.
Length = 110
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 707 RCFISHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
RCF SH+ GG A + + L++ + C R R +CLA
Sbjct: 6 RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46
>AE014296-2592|AAN11770.1| 110|Drosophila melanogaster CG32151-PA
protein.
Length = 110
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 707 RCFISHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
RCF SH+ GG A + + L++ + C R R +CLA
Sbjct: 6 RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46
>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
protein.
Length = 1153
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
S ++ PS PPQPQ+++ H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 127 SNSQPPSMPPQPQQFQSPHPSPHM 150
>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
corepressor Atro protein.
Length = 1985
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
S ++ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
Length = 1966
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
S ++ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
isoform A protein.
Length = 1966
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
S ++ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
isoform D protein.
Length = 1985
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
S ++ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
isoform B protein.
Length = 1985
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
S ++ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
isoform C protein.
Length = 1988
Score = 30.3 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
S ++ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AY070912-1|AAL48534.1| 201|Drosophila melanogaster RE02355p
protein.
Length = 201
Score = 29.9 bits (64), Expect = 4.3
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 561 Y*TLPTQHS*TV-GTQNPAESASNHTAQKINGK*----STVVPTSTSKMGNKAPSCPPQP 725
Y TL T+ + V + AE+ S + NGK T VPT+++K G+K P PQ
Sbjct: 106 YGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTNSTKDGDKKPVAKPQE 165
Query: 726 Q 728
Q
Sbjct: 166 Q 166
>AE013599-730|AAF59031.1| 201|Drosophila melanogaster CG13746-PA
protein.
Length = 201
Score = 29.9 bits (64), Expect = 4.3
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 561 Y*TLPTQHS*TV-GTQNPAESASNHTAQKINGK*----STVVPTSTSKMGNKAPSCPPQP 725
Y TL T+ + V + AE+ S + NGK T VPT+++K G+K P PQ
Sbjct: 106 YGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTNSTKDGDKKPVAKPQE 165
Query: 726 Q 728
Q
Sbjct: 166 Q 166
>AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p
protein.
Length = 101
Score = 28.7 bits (61), Expect = 9.9
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -1
Query: 247 ICFC*EMKRSRTPRRQERPCYRILATPDREPALKL*KRSLAAPLPLFCAWRSCVRFLLKH 68
+C C K ++T +R E+ C R L T ALK K AP P C + ++ +L+
Sbjct: 26 VCACVGAKWNQTSQRVEQCCQRSLIT-----ALKK-KSPFFAPPPPLCQRKLKIQIVLQK 79
Query: 67 VW 62
W
Sbjct: 80 FW 81
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,114,886
Number of Sequences: 53049
Number of extensions: 856906
Number of successful extensions: 2472
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2450
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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