Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a02
         (809 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in EGT...   397   e-109
UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein precur...   120   3e-26
UniRef50_Q91GN0 Cluster: Putative uncharacterized protein; n=1; ...   114   3e-24
UniRef50_Q461S3 Cluster: F protein; n=2; Nucleopolyhedrovirus|Re...    49   2e-04
UniRef50_Q8QLM5 Cluster: Putative uncharacterized protein; n=2; ...    38   0.23 
UniRef50_A1YJ02 Cluster: F protein; n=3; Nucleopolyhedrovirus|Re...    37   0.52 
UniRef50_Q20572 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_Q8IHQ0 Cluster: Putative uncharacterized protein; n=4; ...    35   2.8  
UniRef50_Q80LH8 Cluster: Fusion protein; n=1; Adoxophyes honmai ...    34   4.9  
UniRef50_Q1FEN4 Cluster: Putative uncharacterized protein precur...    34   4.9  
UniRef50_Q8YNR8 Cluster: Alr4493 protein; n=3; Nostocaceae|Rep: ...    33   8.5  
UniRef50_P41833 Cluster: N6-adenosine-methyltransferase IME4; n=...    33   8.5  

>UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in EGT-IAP1
            intergenic region precursor; n=5;
            Nucleopolyhedrovirus|Rep: Uncharacterized 79.9 kDa
            protein in EGT-IAP1 intergenic region precursor -
            Autographa californica nuclear polyhedrosis virus
            (AcMNPV)
          Length = 690

 Score =  397 bits (978), Expect = e-109
 Identities = 194/250 (77%), Positives = 204/250 (81%)
 Frame = -2

Query: 808  LKWFMGRYRDVVYGMCDIRVANYNPKKAYVNTLVDYRKWLYIFPNTNVSVHYYCKDALVQ 629
            ++ FMGRY D V  MCDIRVANYNPKKAYVNTL+DYRKWLYIFPNT VSVHYYC DALV+
Sbjct: 408  IEMFMGRYSDDVDNMCDIRVANYNPKKAYVNTLIDYRKWLYIFPNTTVSVHYYCHDALVE 467

Query: 628  VNTKVLPGVGVMFSTMEQTCSIGITHDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNM 449
            V+TKV PGVGVMFSTM QTCSI IT+DVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQ M
Sbjct: 468  VDTKVSPGVGVMFSTMAQTCSIRITYDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQ-M 526

Query: 448  LLEKATTASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSFHQSKIYTNSATPDEDSQD 269
            LLEKATT SFI TVDNFTRPVLLQL +KFHI+DYTS   H FHQSKIYTNSA PDEDSQD
Sbjct: 527  LLEKATT-SFIPTVDNFTRPVLLQLPHKFHIKDYTSTPHHFFHQSKIYTNSAAPDEDSQD 585

Query: 268  DSNXXXXXXXXXXXXTXXXXXXXXXXXXCIKKRCHQSNNVTVQYKNNDEFVTICNNLENN 89
            DSN                         CIKKRCHQSNNV VQYKNN+EFVTICNNLE+N
Sbjct: 586  DSN-TTVVIIAIVAAMILFCGLLLFLFCCIKKRCHQSNNVVVQYKNNNEFVTICNNLEDN 644

Query: 88   RAYINLTNEY 59
            RAYINL NEY
Sbjct: 645  RAYINLPNEY 654


>UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein
           precursor; n=6; Nucleopolyhedrovirus|Rep:
           Uncharacterized 73.1 kDa protein precursor - Orgyia
           pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
          Length = 657

 Score =  120 bits (290), Expect = 3e-26
 Identities = 64/176 (36%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
 Frame = -2

Query: 808 LKWFMGRYRDVVYGMCDIRVANYNPKKAYVNTLVDYRKWLYIFPNTNVSVHYYCKDALVQ 629
           ++ FMGRY   +   CD+RVA+  P +  +  LV+ RKW+Y F ++N +V Y+C  A   
Sbjct: 392 IEMFMGRYARDIDVQCDMRVADNRPSQVLLGPLVNCRKWVYSF-SSNATVSYWC-GARDA 449

Query: 628 VNTKVLPGVGVMFSTMEQTCSIGITHDVTI-TVDSRFYVSHSTTYWPKKKFNFNNYIDQN 452
               V  GVGV+ +    TCS+ +  D  + TVD+R + + S  YWP+++FN+N+Y++ +
Sbjct: 450 ATVAVPAGVGVVVAQSPLTCSVRVNKDALLFTVDTRSHKAASRAYWPRRRFNYNDYVNTS 509

Query: 451 MLLEKATTASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSFHQSKIYTNSATPD 284
           +LL+  TT SF  TV + +   L  L ++FHI DY +  +H+F   +  +++A PD
Sbjct: 510 LLLQ--TTTSFADTVTDLSAQQLKTLRSRFHIRDY-ATPRHTFFAPR-RSDAAAPD 561


>UniRef50_Q91GN0 Cluster: Putative uncharacterized protein; n=1;
           Epiphyas postvittana NPV|Rep: Putative uncharacterized
           protein - Epiphyas postvittana nucleopolyhedrovirus
           (EppoMNPV)
          Length = 649

 Score =  114 bits (274), Expect = 3e-24
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
 Frame = -2

Query: 808 LKWFMGRYRDVVYGMCDIRVANYNPKKAYVNTLVDYRKWLYIFPNTNVSVHYYCKDALVQ 629
           ++ FMGRY   +  +CDIRVA+ N K+  ++TLV  RKWLY F   N+SV   C    + 
Sbjct: 386 IEMFMGRYASDIDTLCDIRVADNNAKQVLMDTLVVGRKWLYSFAK-NMSVGCLCNHYPMD 444

Query: 628 VNTKVLPGVGVMFSTMEQTCSIGITHD-VTITVDSRFYVSHSTTYWPKKKFNFNNYIDQN 452
           V   V PGVG++ +     CSI I +  +    D++ Y + S TY P+K+F++NNY+D +
Sbjct: 445 VVVSVPPGVGLITTQPSNFCSIRIINTLILFNADTQLYATESITYEPRKQFDYNNYVDGS 504

Query: 451 MLLEKATTASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSF 323
           +L +  T+  F   V + T   L  L ++FHI DYT+  +  F
Sbjct: 505 LLSQ--TSTPFADAVTDLTLTKLRLLRSRFHIRDYTAPPKTFF 545


>UniRef50_Q461S3 Cluster: F protein; n=2; Nucleopolyhedrovirus|Rep:
           F protein - Trichoplusia ni SNPV
          Length = 661

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
 Frame = -2

Query: 808 LKWFMGRYRDVVYGM-CDIRVANYNPKKAYVNTLVDYRKWLYIFPNTNVSVHYYCK---D 641
           ++ F+   +D+ +   CD+R+  +  +  Y   + D+ +WLY+  N  V V++ C    D
Sbjct: 393 IRIFLKNDKDINFEKDCDVRIGKFESEIFY--KITDFNRWLYVLEN-EVDVNFDCLQKGD 449

Query: 640 ALVQVNTKVL-PGVGVMFSTMEQTCSIGITHDVTITVDS 527
             V  NT VL PG+G++ +T + TC +        T+++
Sbjct: 450 NSVSANTLVLSPGIGIINATGKHTCQLSTKRTFLTTIET 488


>UniRef50_Q8QLM5 Cluster: Putative uncharacterized protein; n=2;
           Nucleopolyhedrovirus|Rep: Putative uncharacterized
           protein - Mamestra configurata NPV-A
          Length = 680

 Score = 38.3 bits (85), Expect = 0.23
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = -2

Query: 763 CDIRVANYNPKKAYVNTLVDYRKWLYIFPN-TNVSVHYYCKDALVQVNT----KVLPGVG 599
           CD+R+  +     Y   + DY  WLY+  + TNV+V  +  D +   +     KV  GVG
Sbjct: 420 CDVRLGRFEDVLFY--PIADYNNWLYVMQHDTNVNVQCHKSDGIPADHKFDPIKVSAGVG 477

Query: 598 VMFSTMEQTCSI 563
           V+ +  ++TC +
Sbjct: 478 VIRAIGQETCKL 489


>UniRef50_A1YJ02 Cluster: F protein; n=3; Nucleopolyhedrovirus|Rep:
           F protein - Spodoptera frugiperda nuclear polyhedrosis
           virus (SfNPV)
          Length = 702

 Score = 37.1 bits (82), Expect = 0.52
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
 Frame = -2

Query: 808 LKWFMGRYRDVVYGM-CDIRVANYNPKKAYVNTLVDYRKWLYIFPNTNVSVHYYC----- 647
           +K F+   +D+ Y   CDIRV  +  +  Y  +  DY  WLY+  N ++ ++  C     
Sbjct: 406 IKIFIKNDKDIDYNRDCDIRVGKFESELFYATS--DYNNWLYVLQN-DIDLNIQCIPSDT 462

Query: 646 KDALVQVNTKVL-PGVGVMFSTMEQTCSIGITHDVTITVDSRFYVSHSTTYWP-KKKFNF 473
           +   + +   VL  GVG++ +T +  C +  T    +TV   +   +S    P    FNF
Sbjct: 463 RPDGMSIEPVVLHAGVGLIHATGKDNCKL-TTKKSRLTVHDLYNNLNSVIEIPIGLTFNF 521

Query: 472 N 470
           +
Sbjct: 522 S 522


>UniRef50_Q20572 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 293

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +2

Query: 326 RMLRRRCVIFNVKFIKKLQ*NRTGKIVNSLYKTGG--GCFFKQHILVDVVVKIKF--LFR 493
           RM  RRC  FN +F K    N TG + N+L  +    G  F+Q++L + ++KIK   L +
Sbjct: 107 RMHMRRCRRFNYQFSKFA--NHTGALFNNLMHSNEQLGTLFQQYVLDEHIIKIKTGRLSK 164

Query: 494 PVCS*MADIKS 526
           P    + +I+S
Sbjct: 165 PATEEVPNIES 175


>UniRef50_Q8IHQ0 Cluster: Putative uncharacterized protein; n=4;
            Eukaryota|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 3207

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
 Frame = -2

Query: 478  NFNNYIDQNMLLEKATT--ASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSFHQSKIY 305
            N+ NY ++N  + +  T  A+    +D+          N  HI +  S +Q  +H SKI 
Sbjct: 2190 NYYNYSNKNFYMNEKYTEGATNFMNIDDMKDA---GNENNMHILNNNSINQTYYH-SKIK 2245

Query: 304  TNSATPDEDSQDDSNXXXXXXXXXXXXTXXXXXXXXXXXXCIKKRCHQSNNVTVQYKNND 125
             N+   D+D+ +++N                            K  H  N   +Q + N 
Sbjct: 2246 NNNNNDDDDNNNNNNNNNNDNNDNNNIMMHNNYQPFLYENQYNKHIHMMNQ-QIQKETNT 2304

Query: 124  EFVTI-CNN--LENNRAYINLTNE 62
             F  I CN   +ENN+  IN++N+
Sbjct: 2305 SFKHITCNQKFIENNK--INISND 2326


>UniRef50_Q80LH8 Cluster: Fusion protein; n=1; Adoxophyes honmai
           NPV|Rep: Fusion protein - Adoxophyes honmai
           nucleopolyhedrovirus
          Length = 669

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = -2

Query: 763 CDIRVANYNPKKAYVNTLVDYRKWLYIFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFST 584
           CD+RV  +  +  Y   + DY  WLY+  N +  + + C D+ +     +  G G++   
Sbjct: 405 CDVRVGKFYSEIFY--PISDYNNWLYVLEN-DTELLFDCADSYI-----LKAGTGIIRGD 456

Query: 583 MEQTCSIGITHDVTITV-DSRFYVSHSTTYWP--KKKFNFNNYID 458
             + C++  T  V++++   +  + HSTT       +FN +  ID
Sbjct: 457 GTKNCNMN-TKKVSLSLRQLKNNLMHSTTLMAPISSQFNLSAAID 500


>UniRef50_Q1FEN4 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium phytofermentans ISDg|Rep:
           Putative uncharacterized protein precursor - Clostridium
           phytofermentans ISDg
          Length = 483

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -2

Query: 610 PGVGVMFSTMEQTCSIGITHDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKAT 431
           P + V  + ++   S+    D+   +DS FY+  S+T   K  FN N  + +NM ++K T
Sbjct: 221 PAISVS-NLIQSNYSLEKLSDINYLIDS-FYIVDSSTTVTKSLFNVNELLKKNMAIKKRT 278

Query: 430 TA 425
            A
Sbjct: 279 DA 280


>UniRef50_Q8YNR8 Cluster: Alr4493 protein; n=3; Nostocaceae|Rep:
           Alr4493 protein - Anabaena sp. (strain PCC 7120)
          Length = 295

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 512 ADIKSRIYSYGHIMRYSNRTRLLHSRKHNTNAGQNFCINLYKRVFTIIVDGHVRVWKNV 688
           AD+  R+ + G+ + Y+ +  L+H R H+     N  +  Y+R        H  VW+ +
Sbjct: 204 ADLCRRVQNQGYKILYTPQVSLIHIRGHSMKKNANATVVEYRRSQLYYYKKHCPVWERI 262


>UniRef50_P41833 Cluster: N6-adenosine-methyltransferase IME4; n=4;
           Saccharomycetaceae|Rep: N6-adenosine-methyltransferase
           IME4 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 600

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = -2

Query: 460 DQNMLLEKATTASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSFHQSKIYTNSATPDE 281
           DQN+L+  A     I  +D F+  +L   +NKFH   YT  S  S  + K+ + +  P+ 
Sbjct: 76  DQNLLV--ADRPEKIVYLDVFSLKIL---YNKFHAFYYTLKSSSSSCEEKVSSLTTKPEA 130

Query: 280 DSQDD 266
           DS+ D
Sbjct: 131 DSEKD 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 738,887,347
Number of Sequences: 1657284
Number of extensions: 14388155
Number of successful extensions: 41669
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 38657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41622
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)