Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a02
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    24   1.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.6  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    24   1.6  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    24   1.6  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    24   1.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   8.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.8  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -2

Query: 547 VTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASF 419
           + +T + R+Y   +T    ++ + F+N++ Q+  L K + A+F
Sbjct: 285 LVLTYEMRWYCQTATMEEKQELYEFSNFVSQH--LPKFSAANF 325


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 181 IKKRCHQSNNVTVQYKNNDEFVTICNNLENN-RAYINLT 68
           I+ RC +SN ++   +  D+F        NN + Y N+T
Sbjct: 75  IQIRCIESNMISFYLEATDDFAYFLEVSNNNFKTYSNVT 113


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 42  ISSLSSYSLVKLMYARLFSKLLQIVTNSSLFLYCT 146
           ++ L +  +  L   ++F+K L ++  + LF YC+
Sbjct: 77  VTILGATFVTVLQLHKIFAKGLNVIEANRLFFYCS 111


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 42  ISSLSSYSLVKLMYARLFSKLLQIVTNSSLFLYCT 146
           ++ L +  +  L   ++F+K L ++  + LF YC+
Sbjct: 77  VTILGATFVTVLQLHKIFAKGLNVIEANRLFFYCS 111


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 42  ISSLSSYSLVKLMYARLFSKLLQIVTNSSLFLYCT 146
           ++ L +  +  L   ++F+K L ++  + LF YC+
Sbjct: 77  VTILGATFVTVLQLHKIFAKGLNVIEANRLFFYCS 111


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 405 TILPVLFYCNFLINFTLKI 349
           T+L    YCNF+I F L +
Sbjct: 314 TVLKTNKYCNFIILFYLSV 332



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 216 YSVVYCYFCFAV*KNGVINQI 154
           +S  YCY+   + K+GV N +
Sbjct: 270 FSFCYCYYNSKMTKDGVYNTL 290


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 456 KICCLKKQPPP 424
           KI CLK  PPP
Sbjct: 30  KISCLKTTPPP 40


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 475 FNNYIDQNMLL 443
           FNNY+D+N  L
Sbjct: 17  FNNYMDENQAL 27


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 475 FNNYIDQNMLL 443
           FNNY+D+N  L
Sbjct: 37  FNNYMDENQAL 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,865
Number of Sequences: 336
Number of extensions: 4176
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)