Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13a02
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    26   5.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.6  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   9.6  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   9.6  

>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -2

Query: 724 YVNTLVDYRKWLY----IFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFS 587
           + + ++DY  W Y    +   TN+   Y   D L+   T   PGVG M S
Sbjct: 326 WTDAIMDYLNWQYGPFSVENITNLEEPYLVGDVLILPITAFSPGVGHMGS 375


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 553 HDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTA 425
           +D   T+++  Y     T++  KK N  NY+DQ+ ++   + A
Sbjct: 524 YDFLTTINATLY-----TFFTYKKLNTPNYVDQHAMIRTDSAA 561


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 427 ASFIQTVDNFTRPVLLQLFNKFHI-EDYTSASQHSFHQSKIYTNSATPDEDSQDDSN 260
           AS+++     T+ ++  +++ F + E  T A  HS    +    S +P E+ +DD++
Sbjct: 783 ASYVELDVQMTKDMVPVVYHDFIVNETGTDAQVHSLTLEQFLGASHSPSEEIKDDAS 839


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 15  SFNKSNGFGISSLSSYS-LVKLMYARLFSKLL 107
           SFN+  GFGI+ L+++  LV+ M  +  +KL+
Sbjct: 139 SFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLV 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,649
Number of Sequences: 5004
Number of extensions: 64563
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)