Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p24
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    29   0.29 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   1.5  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    26   2.7  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   3.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    24   8.2  

>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 172 DNYSLHNFYNNNRKPLKPTTLHDGNIK-KSVYENI 71
           DNYSL  F N N  P KP+  H   +K ++++E++
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESL 146


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 169 YP*CSTGNITDAYVLIFYCIQLLYDLINVHNNTFIDTHI*F 291
           YP   + NI DAYV+I   +++++ ++ +  +  +D  + F
Sbjct: 696 YPLGHSNNINDAYVVIHTLLKVIFSVVPLPFDVPVDNSVDF 736


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 193 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMP 32
           +CL CT+    L  FY    K +K T +      K+  + I +  K    ENMP
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACGKGIKHFLKKW--ENMP 167


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 157 HNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHDHKFYNR 2
           HN Y++  KP+    L      KS Y +++  R L  K++  G  D KF+ +
Sbjct: 326 HNIYSSFIKPIDDRRLEFDEQSKSFYGSLS--RYLSAKKDKKG-GDSKFFQK 374


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -2

Query: 151 FYNNNRK--PLKPTTLHDGNIKKSVYENITYVRKLM 50
           F N   K  PL+P+  HD   K S Y      R++M
Sbjct: 514 FVNKRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIM 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,505
Number of Sequences: 5004
Number of extensions: 32053
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)