Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12p24
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81456-1|CAB03810.1| 548|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 27 4.1
U58727-4|AAB00584.2| 148|Caenorhabditis elegans Hypothetical pr... 27 4.1
U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical p... 27 4.1
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 24 5.2
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 24 5.3
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 24 5.3
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 24 5.4
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 24 5.4
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 27 5.5
U64846-9|AAG24117.3| 343|Caenorhabditis elegans Serpentine rece... 27 7.2
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical ... 27 7.2
Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical pr... 26 9.5
U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbona... 26 9.5
U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbona... 26 9.5
L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily as... 26 9.5
L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily ass... 26 9.5
AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion transpo... 26 9.5
AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion transpo... 26 9.5
>Z81456-1|CAB03810.1| 548|Caenorhabditis elegans Hypothetical
protein B0462.1 protein.
Length = 548
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 265 CYYVRLLNHIITEYNKKLKHMHQ*YC 188
C +LN+ EYNK++ +H YC
Sbjct: 305 CKEAEVLNNAFDEYNKRMDELHNEYC 330
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 68 CDIFVNRFFNVTIV*RCRLER 130
CD+F R+F+V +V RC E+
Sbjct: 89 CDLFPERWFDVVVVLRCPTEK 109
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 299 RFSKLNSLYEYNSTCKTQSKDDVIFVRYYKHV 394
RF +NS + NS KT + +D++ R KHV
Sbjct: 28 RFPAMNSRRKRNSVRKTATIEDIVEPRKVKHV 59
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 299 RFSKLNSLYEYNSTCKTQSKDDVIFVRYYKHV 394
RF +NS + NS KT + +D++ R KHV
Sbjct: 30 RFPAMNSRRKRNSVRKTATIEDIVEPRKVKHV 61
>U58727-4|AAB00584.2| 148|Caenorhabditis elegans Hypothetical
protein D1005.5 protein.
Length = 148
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = -2
Query: 268 TCYYVRLLNHIITEYNKKLKHMHQ*YC-LCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIK 92
TCY + + ++ N K+ +HQ C + +N SL ++ + + L+ + +IK
Sbjct: 58 TCYQRKKRSRVVIVLNLKIPKVHQNRVKKCVSFNNGSL--YHVSETESLRTLRV---DIK 112
Query: 91 KSVYENITY-----VRKLMCKE 41
K +EN+T+ VR++ C +
Sbjct: 113 KCFFENLTFCPHAAVREINCTD 134
>U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical
protein C35D10.2 protein.
Length = 357
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 293 IIRFSKLNSLYEYNSTCKTQSKDDVIFV 376
I +++ + LY+ + C T SKDD+IF+
Sbjct: 78 IDKWNNMEELYQSIADCFTISKDDIIFL 105
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 23.8 bits (49), Expect(2) = 5.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 133 CGCCCKNCAT 162
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 5.2
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 139 CCCKNCATNNYP*C 180
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 23.8 bits (49), Expect(2) = 5.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 133 CGCCCKNCAT 162
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 5.3
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 139 CCCKNCATNNYP*C 180
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 23.8 bits (49), Expect(2) = 5.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 133 CGCCCKNCAT 162
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 5.3
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 139 CCCKNCATNNYP*C 180
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 23.8 bits (49), Expect(2) = 5.4
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 133 CGCCCKNCAT 162
C CCC+ C T
Sbjct: 91 CCCCCRRCCT 100
Score = 21.8 bits (44), Expect(2) = 5.4
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 139 CCCKNCATNNYP*C 180
CCC C T P C
Sbjct: 105 CCCTRCCTCCRPCC 118
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 23.8 bits (49), Expect(2) = 5.4
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1
Query: 133 CGCCCKNCAT 162
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 5.4
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 139 CCCKNCATNNYP*C 180
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 EVCGCCCK-NCATNNYP*CSTGNITDAYVLIFYCIQ 231
+ CG C +CAT N P C+ +T + I + ++
Sbjct: 365 QTCGSACPISCATRNQPRCNERCVTGCFCKIPFILE 400
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 EVCGCCCK-NCATNNYP*CSTGNITDAYVLIFYCIQ 231
+ CG C +CAT N P C+ +T + I + ++
Sbjct: 156 QTCGSACPISCATRNQPRCNERCVTGCFCKIPFILE 191
>U64846-9|AAG24117.3| 343|Caenorhabditis elegans Serpentine
receptor, class h protein193 protein.
Length = 343
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 44 FAHQLANICDIFVNRFFNV 100
FA+ + +I IF NRFFN+
Sbjct: 108 FAYMVISIVSIFENRFFNI 126
>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
protein R03G5.3 protein.
Length = 1311
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 266 RLSILTFDFIIRFSKLNSLYEYNSTCKTQ 352
+L +L FDF ++NS Y + C+TQ
Sbjct: 655 KLVLLVFDFNTNTFQINSNYNFTWFCRTQ 683
>AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical
protein T11F1.6 protein.
Length = 431
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -2
Query: 211 KHMHQ*YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKL 53
K++H YCL + SL F+N + P K T ++ GN++ + + YV KL
Sbjct: 323 KNIHANYCLDGVSFSESLCQFFNMSSLPEKCTYIY-GNVEINAGDE-EYVYKL 373
>Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical
protein F44E5.2 protein.
Length = 820
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = -3
Query: 315 FNFEKRMIKSNVSIDKRVIMYVY*II**LNTIKN*NICISDIACAAL 175
FNF IKS+ ID I YVY I NT + N+ I AC +L
Sbjct: 329 FNF----IKSSYHIDNEWIQYVYRAI---NTCSSDNVQIQGGACLSL 368
>U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform b protein.
Length = 883
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 191 LPVLHYG*LFVAQFLQQQPQTSQADNV 111
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform a protein.
Length = 956
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 191 LPVLHYG*LFVAQFLQQQPQTSQADNV 111
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform a protein.
Length = 507
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 311 LNSLYEYNSTCKTQSKDDVIFVRYY 385
LN LY+ + K ++KDD+ F++ Y
Sbjct: 250 LNVLYKLDPKSKLENKDDIGFLKQY 274
>L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform b protein.
Length = 568
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 311 LNSLYEYNSTCKTQSKDDVIFVRYY 385
LN LY+ + K ++KDD+ F++ Y
Sbjct: 311 LNVLYKLDPKSKLENKDDIGFLKQY 335
>AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion
transporter ABTS-4b protein.
Length = 936
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 191 LPVLHYG*LFVAQFLQQQPQTSQADNV 111
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion
transporter ABTS-4a protein.
Length = 956
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 191 LPVLHYG*LFVAQFLQQQPQTSQADNV 111
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,132,101
Number of Sequences: 27780
Number of extensions: 182939
Number of successful extensions: 458
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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