Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12p22
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 287 9e-79
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 37 0.004
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 31 0.19
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 2.3
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 2.3
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 27 4.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 5.4
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 7.2
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 9.5
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 287 bits (705), Expect = 9e-79
Identities = 142/252 (56%), Positives = 179/252 (71%)
Frame = -3
Query: 799 GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
GVA IA+ E+ GAEM R F + YGEP++R+A+PLA+ L S SNPQ+ + D L++YSH
Sbjct: 637 GVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSH 696
Query: 619 DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
D+D DVAYNAIFAMGLVGAGT+N Y+ K LFMVR+AQGL + GKGT
Sbjct: 697 DNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGT 756
Query: 439 VTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDE 260
+TL P H +R++L Q A AGL+ V+ A LD T +L SH+LLY + A++PR L+TL E
Sbjct: 757 MTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGE 816
Query: 259 NLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYIPLSPIME 80
+ Q L VSVRVGQAVDV+G+AG PK I G THTTPVLL ERAELAT+ Y PL+ +E
Sbjct: 817 DGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LE 875
Query: 79 GFVILKKNEDSV 44
G VILKKN + +
Sbjct: 876 GIVILKKNTEDI 887
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 36.7 bits (81), Expect = 0.004
Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 3/266 (1%)
Frame = +3
Query: 9 TTKVHFY*TEAMTLSSFFLRITNPSIIGESGMYSSVASSARSPKDSSTGVV*VWEPAIVF 188
TT ++ + A + S + S+ S + SS +S S +S+ + A
Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLT--SSSATSS 117
Query: 189 GVPAFPITSTACPTRTLTFKG*RFSSRVTSQRGCIAVANTYSK*WDLPRIMVLQSRKAVS 368
+ + TS++ + ++T SS +TS +A ++T S L S S
Sbjct: 118 SLASSSTTSSSLASSSITSSS-LASSSITSSS--LASSSTTSS--------SLASSSTNS 166
Query: 369 TTSR-PASAGWLSRRRSACAGHRVTVPLPA*HSPCASRTMNRCTGDLPWYSASARSIVAS 545
TTS P S+ S S A + T S AS ++N T + + S ++S
Sbjct: 167 TTSATPTSSATSSSLSSTAASNSAT------SSSLASSSLNSTTS-----ATATSSSLSS 215
Query: 546 LALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAGSPY 725
A A +S +A+ +L +T+ + + +S++++ S L + + A+ +A T+ S
Sbjct: 216 TAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQ 275
Query: 726 LPSCPKM--RVHISAPVSSANAMTAT 797
+ + S P+SSAN+ TAT
Sbjct: 276 YNTSSLLPSSTPSSTPLSSANSTTAT 301
Score = 29.5 bits (63), Expect = 0.58
Identities = 38/146 (26%), Positives = 58/146 (39%)
Frame = +3
Query: 360 AVSTTSRPASAGWLSRRRSACAGHRVTVPLPA*HSPCASRTMNRCTGDLPWYSASARSIV 539
A STT+ AS+ L+ S + PL + S A+ T T P S ++ +
Sbjct: 295 ANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSS--ANSTTATSTSSTPLSSVNSTTAT 352
Query: 540 ASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAGS 719
++ + + + S A A S + S S T ++ S TA S
Sbjct: 353 SASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS 412
Query: 720 PYLPSCPKMRVHISAPVSSANAMTAT 797
LP+ S P+SSAN+ TAT
Sbjct: 413 SVLPTSSVS----STPLSSANSTTAT 434
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 322 HYLLYVLATAMQPRWLVTLDENLQPLN 242
H++LYV + +QP WL D N+ P N
Sbjct: 333 HFVLYVPSPQIQPLWLENEDSNIIPTN 359
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 154 PVLLSFGERAELATDEYIPLSPIMEGFVILKKNEDSVMASVQ 29
P LLSF + + Y+ LSPI+ GF+ L+ N S+ + Q
Sbjct: 631 PALLSF-RSSNFSKRPYV-LSPILNGFLKLQDNPSSIYFAKQ 670
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 185 LRCTGFSDNIHSLSHTHADVQGLKIFVEGDQPAGLHRSRQYVQQVVGFAEDYGLAVEE 358
+R +DN+ L +V+ + + + G PAGL + + QQ D + V E
Sbjct: 69 VRLNELTDNLRKLDTIEREVEDVDVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLE 126
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = -3
Query: 679 LCSVSNPQ------LSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTN 554
+C NPQ VI VL+K + D DV +A++A+ + G N
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGAN 280
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 654 SCGLDTEHRAMASGTARRTAGSPYLPS 734
S +T ++A+ S ++ R+ G PY PS
Sbjct: 93 SPSFNTSYQAIPSSSSNRSRGGPYTPS 119
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -3
Query: 280 WLVTLDENLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTH 161
W T+ ++QP +V + Q+++ + K +A H H
Sbjct: 180 WHPTISSHIQPETATVFIEQSLNFLEGPKLTKALAAQHLH 219
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 674 AQGDGERHGAPHCRLPVPTQLSEDA 748
A GDGE P C +P+ LS A
Sbjct: 741 AAGDGENVNCPSCFIPLSIDLSAPA 765
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,585
Number of Sequences: 5004
Number of extensions: 55943
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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