Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12p22
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 300 9e-82
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 298 4e-81
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 206 1e-53
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 34 0.11
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87... 34 0.15
11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402 31 1.4
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 30 2.5
06_02_0289 + 13825103-13825510,13825651-13826112,13826189-138270... 29 3.3
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089... 29 3.3
03_05_0662 + 26540625-26541152 29 4.3
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049... 29 4.3
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 29 5.7
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 29 5.7
07_03_0844 - 21971222-21971635 28 9.9
07_03_0794 + 21562995-21563004,21564151-21565799 28 9.9
06_03_0981 + 26527005-26527260,26527457-26527770 28 9.9
05_02_0156 + 7163756-7163834,7165447-7166225 28 9.9
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 28 9.9
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800... 28 9.9
>02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 300 bits (736), Expect = 9e-82
Identities = 143/250 (57%), Positives = 188/250 (75%)
Frame = -3
Query: 799 GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
G+A+IA+AEE GAEM R +L +YGE +RRAVPLA+ + +SNP+++V+D L++ SH
Sbjct: 645 GIALIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMDTLSRLSH 704
Query: 619 DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
D+D DV+ AI ++G +GAGTNN Y+ K HLF VR+AQGL H GKG
Sbjct: 705 DADADVSMAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLVHLGKGL 764
Query: 439 VTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDE 260
+TL P H+DR LL+ AL GL+ VL A LD K+ ILGK HY+LY++ AMQPR L+T+DE
Sbjct: 765 LTLSPYHSDRFLLSPMALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDE 824
Query: 259 NLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYIPLSPIME 80
+L+PL+V VRVGQAVDV+G+AG PKTI G TH+TPVLL+ GERAELAT++YIPL+ ++E
Sbjct: 825 DLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYIPLTSVLE 884
Query: 79 GFVILKKNED 50
GFVILKKN +
Sbjct: 885 GFVILKKNPE 894
>09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 298 bits (731), Expect = 4e-81
Identities = 142/250 (56%), Positives = 191/250 (76%)
Frame = -3
Query: 799 GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
G+++I++AEE GAEM R +L +YGE +RRAVPLA+ L +SNP+++V+D +++ SH
Sbjct: 685 GISLISMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTMSRLSH 744
Query: 619 DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
D+D +V+ AI ++GL+GAGTNN Y+ K HLF VR+AQGL H GKG
Sbjct: 745 DADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFCVRIAQGLVHLGKGL 804
Query: 439 VTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDE 260
+TL P H+DR LL+ ALAGL+ VL A LD K+IILGK HY+LY+LA AMQPR L+T+DE
Sbjct: 805 LTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGKYHYMLYILALAMQPRMLLTVDE 864
Query: 259 NLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYIPLSPIME 80
+L+PL+V V VGQAVDV+G+AG PKTI G TH+TPVLL+ GERAELAT++Y+PL+P++E
Sbjct: 865 DLKPLSVPVCVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYLPLTPVLE 924
Query: 79 GFVILKKNED 50
GFVIL+ N +
Sbjct: 925 GFVILRNNPE 934
>06_03_1276 - 28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 206 bits (504), Expect = 1e-53
Identities = 100/187 (53%), Positives = 136/187 (72%)
Frame = -3
Query: 799 GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
G+++IA+AEE GAEM R +L +YGE +RRAVPLA+ L +SNP+++V+D +++ SH
Sbjct: 648 GISLIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTMSRLSH 707
Query: 619 DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
D+D +V+ AI ++GL+GAGTNN Y+ K HLF VR+AQGL H GKG
Sbjct: 708 DADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFCVRIAQGLVHLGKGL 767
Query: 439 VTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDE 260
+TL P H+DR LL+ ALAGL+ VL A LD K+IILGK HY+LY+L AMQPR L+T+DE
Sbjct: 768 LTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGKYHYMLYILTLAMQPRMLLTVDE 827
Query: 259 NLQPLNV 239
+L+PL+V
Sbjct: 828 DLKPLSV 834
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 540 ASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAGS 719
+SL ++P T +L S +E + +LS+S T L T M SG+ R+T
Sbjct: 67 SSLPKILPFSTDSNGESSLSRMSQAEFSDPILSSSSTFCTSLYTSS-PMNSGSCRKTGYL 125
Query: 720 PYLPSCPKM-RVHISAPVSSANAM 788
P+LP PK + SA SS++ M
Sbjct: 126 PFLPQPPKCEQQQNSAGQSSSSLM 149
>05_01_0128 +
866817-866859,867789-867874,868142-868231,868337-870214,
870606-870795,870888-871483
Length = 960
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -2
Query: 266 RRKSSALERQRACGTGCGCYRKSRYTEDNSRFPHSHDAGAAVLRRASR 123
RRKSS E Q A G+G S + ++ +P +H G++V R+A +
Sbjct: 401 RRKSSERECQLAIGSGRATDTPSSFEDNLPIYPPNHSVGSSVCRKAKK 448
>11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402
Length = 154
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 666 DTEHRAMASGTARRTAGSPYLPSCPKMRVHISAPVSSANAMTA 794
D E +A A A A P LPS P+ R+ + A V+S + +TA
Sbjct: 34 DEEEKAPAGSGAAIAAARPLLPSSPRSRIEM-AMVNSPSGVTA 75
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +2
Query: 269 GDQPAGLHRSRQYVQQVV---GFAEDY---GLAVEEGGE-HDEQAGERGLVEQAPVRVRG 427
GD+ AG RSR+ +++VV GF DY +A EGG E +GL EQ +
Sbjct: 58 GDRAAGGERSREELERVVMELGFQNDYLKSQIAAAEGGSGAAESELVKGLKEQVERLRKE 117
Query: 428 TQGHRALAGVTQ 463
+ H+ T+
Sbjct: 118 VEEHKQTQKATE 129
>06_02_0289 +
13825103-13825510,13825651-13826112,13826189-13827021,
13827104-13827274,13828025-13828076
Length = 641
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 360 AVSTTSRPASAGWLSRRRSACAGHRVTVP 446
AV TSR LS+RRS+CA VT P
Sbjct: 248 AVHPTSRAQHDASLSQRRSSCASTEVTTP 276
>02_03_0155 +
15805683-15805743,15805824-15806105,15808293-15808959,
15809440-15810490
Length = 686
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Frame = +2
Query: 134 AEGQQHRRRVSV-GTGYCLRCT--GFSDNIHSLSHTHADVQGLK-----IFVEGD--QPA 283
AE ++ RR S+ T CL+ + GF H L T QG + ++ A
Sbjct: 316 AEKKEWGRRRSIRATTMCLKSSFHGFQQQAHWLHSTPVSFQGFRPPENWVYSPNQITGSA 375
Query: 284 GLHRSRQYVQQVVGFAEDYGLAVEEGGEHDEQAGERG 394
H S Q + E+ + +EE ++ ++AG RG
Sbjct: 376 SSHGSESASQCPARYEENNVVDIEESSDNSQEAGRRG 412
>03_05_0662 + 26540625-26541152
Length = 175
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 312 CTYWRLRCSPAGWSPSTKIFSP*TSACVWD 223
C YW L+ P WS S + +P WD
Sbjct: 17 CKYWLLKTEPGEWSWSDQARAPGGGVAPWD 46
>02_05_0256 +
27201483-27202499,27203297-27203375,27204617-27204946,
27205029-27205198
Length = 531
Score = 29.1 bits (62), Expect = 4.3
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +3
Query: 471 ASRTMNRCTGDLPWYSASARSIVASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMT 650
A+R + R DLP ++SAR++ A P P A+ A +++++ + S S
Sbjct: 148 AARALRRSGRDLPRIASSARAVAAKPP--PPPPAGLPADGTALAAAIADATAAVASASAA 205
Query: 651 ESCGLDTEHRAMASGTAR-RTAGSP-YLPSCPKMRVHISAP 767
G+ + ++A+ TAR A +P ++PS + + P
Sbjct: 206 VFSGVSS--LSIAAATARVEVAATPCWMPSPARFTTPSATP 244
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -2
Query: 317 LAVRIGDCDAAPLAGHPRRKSSALERQRACGTGCGCYRKSRYTEDNSRFPHSHDAGAAVL 138
LA + + PL+G PRR+ +A R A CG Y ++ + R D +
Sbjct: 4 LAQHVAGLASPPLSGAPRRRPAAPTRPSA--LVCGTYALTKEERERERMCQLFDEASERC 61
Query: 137 RRASRTG 117
R A G
Sbjct: 62 RTAPMEG 68
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 338 NPRQIPLLAVR---IGDCDAAPLAGHPRRKSSALERQ 237
+PRQ+ L++R IG+C +P+A P + +E +
Sbjct: 575 SPRQLEKLSIRSSPIGECSLSPVADKPEKSEVVIESE 611
>07_03_0844 - 21971222-21971635
Length = 137
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 314 AVRIGDCDAAPLAGHPRRKSSALERQRACGTGCGC 210
AVRI + D + + H ++ E +RAC C C
Sbjct: 57 AVRISNGDISEVFDHRMHDTNVQELERACKVACWC 91
>07_03_0794 + 21562995-21563004,21564151-21565799
Length = 552
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 172 SHTHTTPVLLSFGERAE 122
SHT+TTP L+ FGE E
Sbjct: 425 SHTNTTPFLMRFGETME 441
>06_03_0981 + 26527005-26527260,26527457-26527770
Length = 189
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 357 KAVSTTSRPASAGWLSRRRSACAGHRVTVPLPA 455
+ V+T + A A W SRRR +C+G V + A
Sbjct: 28 RRVTTVAIEAVAAWWSRRRRSCSGADVELACAA 60
>05_02_0156 + 7163756-7163834,7165447-7166225
Length = 285
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -2
Query: 335 PRQIPLLAVRIGDCDAAPLAGHPRRKSSALE 243
PR++P R +C+AAPLAG ++ +++LE
Sbjct: 130 PRRLP--GRRRHECEAAPLAGEAKQCATSLE 158
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 633 LSTSMTESCGLDTEHRAMASGTARRTAGSPYLPSCPKMRVHISAP-VSSANAMT 791
L +++ES GL+ H A G + Y P CP+ + P NA+T
Sbjct: 176 LLEAISESLGLERGHMVSAMGRQAQHMAVNYYPPCPQPELTYGLPGHKDPNAIT 229
>03_05_0690 +
26778567-26778804,26778950-26779024,26779995-26780099,
26780869-26781000,26781432-26781571,26782213-26782323,
26782690-26782812,26784166-26784267,26784536-26784546,
26784878-26785103,26785363-26785401,26785413-26785583,
26785674-26785753,26785976-26786039
Length = 538
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 226 GQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAE---LATDEYIPLSPIM 83
G +VDV GTP +A S+ ++ VL+ A + D Y PL+ ++
Sbjct: 196 GASVDVSSSEGTPLHVAASNGKSSIVLILLEHHANPNVMTPDCYTPLTAVL 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,283,430
Number of Sequences: 37544
Number of extensions: 465604
Number of successful extensions: 1884
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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