Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p22
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145304-1|AAF08385.1|  919|Drosophila melanogaster 26S proteaso...   326   3e-89
AF132182-1|AAD34770.1|  919|Drosophila melanogaster unknown prot...   326   3e-89
AE014296-3245|AAF49095.2|  919|Drosophila melanogaster CG7762-PA...   326   3e-89
BT022160-1|AAY51554.1|  520|Drosophila melanogaster IP01388p pro...    37   0.037
AE014298-690|AAF45994.2|  543|Drosophila melanogaster CG32772-PA...    37   0.037
AY069721-1|AAL39866.1|  285|Drosophila melanogaster LP02658p pro...    31   1.8  

>AF145304-1|AAF08385.1|  919|Drosophila melanogaster 26S proteasome
            regulatory complexsubunit p97 protein.
          Length = 919

 Score =  326 bits (800), Expect = 3e-89
 Identities = 156/252 (61%), Positives = 190/252 (75%)
 Frame = -3

Query: 799  GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
            G+A+IA+ E+ GAEM  R FG L RY EPA+RRAVPLA+ L S SNP+L++ID L+K+SH
Sbjct: 667  GIALIAMGEDIGAEMAYRSFGNLLRYCEPAIRRAVPLALGLISASNPKLNIIDTLSKFSH 726

Query: 619  DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
            DSD +VA+NAIFAMGLVGAGTNN            YH K P +LFMVR+AQ L H GKGT
Sbjct: 727  DSDAEVAHNAIFAMGLVGAGTNNARLASMLRQLAQYHSKDPSNLFMVRIAQSLTHLGKGT 786

Query: 439  VTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDE 260
            ++L P H+DR+L+N  A+AGL+  L + LD K +IL +SHYLLY L  AMQ R L+T DE
Sbjct: 787  LSLSPYHSDRQLMNPMAVAGLMATLVSLLDVKNLILNRSHYLLYTLVPAMQARMLITFDE 846

Query: 259  NLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYIPLSPIME 80
             L  L V VRVG A+DV+G+AG PKTI G  THTTPVLL+ GERAELATDEY+ L+P+ME
Sbjct: 847  ELNQLQVPVRVGIAIDVVGQAGKPKTITGFQTHTTPVLLAIGERAELATDEYLALTPVME 906

Query: 79   GFVILKKNEDSV 44
            GFVILKKN + V
Sbjct: 907  GFVILKKNPNFV 918


>AF132182-1|AAD34770.1|  919|Drosophila melanogaster unknown protein.
          Length = 919

 Score =  326 bits (800), Expect = 3e-89
 Identities = 156/252 (61%), Positives = 190/252 (75%)
 Frame = -3

Query: 799  GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
            G+A+IA+ E+ GAEM  R FG L RY EPA+RRAVPLA+ L S SNP+L++ID L+K+SH
Sbjct: 667  GIALIAMGEDIGAEMAYRSFGNLLRYCEPAIRRAVPLALGLISASNPKLNIIDTLSKFSH 726

Query: 619  DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
            DSD +VA+NAIFAMGLVGAGTNN            YH K P +LFMVR+AQ L H GKGT
Sbjct: 727  DSDAEVAHNAIFAMGLVGAGTNNARLASMLRQLAQYHSKDPSNLFMVRIAQSLTHLGKGT 786

Query: 439  VTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDE 260
            ++L P H+DR+L+N  A+AGL+  L + LD K +IL +SHYLLY L  AMQ R L+T DE
Sbjct: 787  LSLSPYHSDRQLMNPMAVAGLMATLVSLLDVKNLILNRSHYLLYTLVPAMQARMLITFDE 846

Query: 259  NLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYIPLSPIME 80
             L  L V VRVG A+DV+G+AG PKTI G  THTTPVLL+ GERAELATDEY+ L+P+ME
Sbjct: 847  ELNQLQVPVRVGIAIDVVGQAGKPKTITGFQTHTTPVLLAIGERAELATDEYLALTPVME 906

Query: 79   GFVILKKNEDSV 44
            GFVILKKN + V
Sbjct: 907  GFVILKKNPNFV 918


>AE014296-3245|AAF49095.2|  919|Drosophila melanogaster CG7762-PA
            protein.
          Length = 919

 Score =  326 bits (800), Expect = 3e-89
 Identities = 156/252 (61%), Positives = 190/252 (75%)
 Frame = -3

Query: 799  GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
            G+A+IA+ E+ GAEM  R FG L RY EPA+RRAVPLA+ L S SNP+L++ID L+K+SH
Sbjct: 667  GIALIAMGEDIGAEMAYRSFGNLLRYCEPAIRRAVPLALGLISASNPKLNIIDTLSKFSH 726

Query: 619  DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
            DSD +VA+NAIFAMGLVGAGTNN            YH K P +LFMVR+AQ L H GKGT
Sbjct: 727  DSDAEVAHNAIFAMGLVGAGTNNARLASMLRQLAQYHSKDPSNLFMVRIAQSLTHLGKGT 786

Query: 439  VTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDE 260
            ++L P H+DR+L+N  A+AGL+  L + LD K +IL +SHYLLY L  AMQ R L+T DE
Sbjct: 787  LSLSPYHSDRQLMNPMAVAGLMATLVSLLDVKNLILNRSHYLLYTLVPAMQARMLITFDE 846

Query: 259  NLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYIPLSPIME 80
             L  L V VRVG A+DV+G+AG PKTI G  THTTPVLL+ GERAELATDEY+ L+P+ME
Sbjct: 847  ELNQLQVPVRVGIAIDVVGQAGKPKTITGFQTHTTPVLLAIGERAELATDEYLALTPVME 906

Query: 79   GFVILKKNEDSV 44
            GFVILKKN + V
Sbjct: 907  GFVILKKNPNFV 918


>BT022160-1|AAY51554.1|  520|Drosophila melanogaster IP01388p
           protein.
          Length = 520

 Score = 36.7 bits (81), Expect = 0.037
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 62  LENHESLHYRRERYV--LVSRQFCSLAEGQQHRRRVSVGTGY-CLRCTGFSDNIHSLSHT 232
           L NH   H++ ++Y   + +++F  +    QH +  +  TGY C RC   +  + S  HT
Sbjct: 232 LNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHT 291

Query: 233 HADVQGLKIFVEGDQ 277
           H    GL    E D+
Sbjct: 292 HMKTHGLAFPYECDK 306


>AE014298-690|AAF45994.2|  543|Drosophila melanogaster CG32772-PA
           protein.
          Length = 543

 Score = 36.7 bits (81), Expect = 0.037
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 62  LENHESLHYRRERYV--LVSRQFCSLAEGQQHRRRVSVGTGY-CLRCTGFSDNIHSLSHT 232
           L NH   H++ ++Y   + +++F  +    QH +  +  TGY C RC   +  + S  HT
Sbjct: 255 LNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHT 314

Query: 233 HADVQGLKIFVEGDQ 277
           H    GL    E D+
Sbjct: 315 HMKTHGLAFPYECDK 329


>AY069721-1|AAL39866.1|  285|Drosophila melanogaster LP02658p
           protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 83  HYRRERYV--LVSRQFCSLAEGQQHRRRVSVGTGY-CLRCTGFSDNIHSLSHTHADVQGL 253
           H++ ++Y   + +++F  +    QH +  +  TGY C RC   +  + S  HTH    GL
Sbjct: 4   HHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGL 63

Query: 254 KIFVEGDQ 277
               E D+
Sbjct: 64  AFPYECDK 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,172,105
Number of Sequences: 53049
Number of extensions: 729094
Number of successful extensions: 2775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2775
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)