Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p22
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   301   3e-82
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    31   0.96 
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    31   0.96 
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical ...    28   6.8  
U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated p...    28   8.9  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    28   8.9  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     28   8.9  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  301 bits (740), Expect = 3e-82
 Identities = 151/257 (58%), Positives = 188/257 (73%), Gaps = 7/257 (2%)
 Frame = -3

Query: 799  GVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDVLNKYSH 620
            G+ +IA+ ++ G++M  R+FG L RYGEP +RRAVPLA++L SVSNPQL++++ L+K+SH
Sbjct: 715  GIGLIAMGDDIGSQMALRMFGHLIRYGEPVIRRAVPLALSLLSVSNPQLNILETLSKFSH 774

Query: 619  DSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXLYHGKSPVHLFMVRLAQGLCHAGKGT 440
            DSD D A+NAIFAMGLVGAGTNN            YH K  V L +VR+AQGL H GKGT
Sbjct: 775  DSDADTAHNAIFAMGLVGAGTNNARLVAMLRNLASYHYKDQVSLMLVRIAQGLTHLGKGT 834

Query: 439  VTLCPAHADRRLLNQPALAGLLVVLTAFLDC-KTIILGKSHYLLYVLATAMQPRWLVTLD 263
            +TL P H+DR+LL+  ALA LL +  +FLD   TI+  + HYLLY L  AMQPR L TL 
Sbjct: 835  MTLNPWHSDRQLLSPSALASLLSICFSFLDANNTILNNRQHYLLYTLVLAMQPRMLTTLV 894

Query: 262  E------NLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPVLLSFGERAELATDEYI 101
            E      +L+ LNVSVRVGQAVDV+ +AG PKTI G  THTTPVLL+ GERAELA DEY+
Sbjct: 895  EDEMKPGSLKQLNVSVRVGQAVDVVAQAGKPKTITGFQTHTTPVLLAHGERAELANDEYL 954

Query: 100  PLSPIMEGFVILKKNED 50
             ++P +EG VILKKN D
Sbjct: 955  SVTPHLEGLVILKKNPD 971


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 191 CTGFSDNIHSLSHTHADVQGLKIFVEGDQPAG 286
           CT   D +HS+SHT++D++  K+ ++ +   G
Sbjct: 413 CTTIRDLVHSVSHTYSDLENNKLKLDDESRLG 444


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 191 CTGFSDNIHSLSHTHADVQGLKIFVEGDQPAG 286
           CT   D +HS+SHT++D++  K+ ++ +   G
Sbjct: 413 CTTIRDLVHSVSHTYSDLENNKLKLDDESRLG 444


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 315 CCTYWRLRCSPAGWSPS 265
           CC  W   C+P G+SPS
Sbjct: 165 CCRAWHGSCAPKGYSPS 181


>AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical
           protein E02H9.9 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 300 RLRCSPAGWSPST---KIFSP*TSACVWDRLWMLSEKP 196
           R+RC  +G+ PST   +IFS      + +  WM+S +P
Sbjct: 3   RIRCELSGFGPSTFFSEIFSKEVDDKIGETDWMVSRRP 40


>U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated
           protein 83, isoform b protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 96  SGMYSSVASSARSPKDSSTGVV*VW 170
           SG  S  ASSARS   SSTG + +W
Sbjct: 47  SGADSDTASSARSSTSSSTGEMRLW 71


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
           protein 83, isoform a protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 96  SGMYSSVASSARSPKDSSTGVV*VW 170
           SG  S  ASSARS   SSTG + +W
Sbjct: 113 SGADSDTASSARSSTSSSTGEMRLW 137


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 96  SGMYSSVASSARSPKDSSTGVV*VW 170
           SG  S  ASSARS   SSTG + +W
Sbjct: 113 SGADSDTASSARSSTSSSTGEMRLW 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,650
Number of Sequences: 27780
Number of extensions: 338184
Number of successful extensions: 1143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)